View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9703_low_24 (Length: 369)
Name: NF9703_low_24
Description: NF9703
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9703_low_24 |
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Alignment Details
Target: chr4 (Bit Score: 282; Significance: 1e-158; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 2 - 352
Target Start/End: Original strand, 35262425 - 35262787
Alignment:
| Q |
2 |
ggaaagtttgttgatgaaaagcgtgagagggaacaagataacccggtttcgataagttcagatgagtacggtgaaagtgatgaagaacactttgttgatt |
101 |
Q |
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| T |
35262425 |
ggaaagtttgttgatgaaaattgtgagagggaacaagataacccggtttcgataagttcagatgagtatggtgaaagtgatgaagaacactttgttgatt |
35262524 |
T |
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| Q |
102 |
ctgatgctgataatgaagaagaagnnnnnnnngaag------------atgatgctgttaaagagggagtaaaaagtgatgaaagtgggggaattggtag |
189 |
Q |
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|||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35262525 |
ctgatgctgataatgaagaagaagaggaagaagaagaaaaaaaagaagatgatgctgttaaagagggagtaaaaagtgatgaaagtgggggaattggtag |
35262624 |
T |
|
| Q |
190 |
gttttctgataaaggtgaaaaggttataattgatttggatgattctgaagagagtgaggaggaggatgattctgatgagagtgaagaaaatgactctagt |
289 |
Q |
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| T |
35262625 |
gttttctgataaaggtgaaaaggttataattgatttggatgattctgaagagagtgaggaggaggatgattctgatgagagtgaagaaaatgactctagt |
35262724 |
T |
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| Q |
290 |
gatgaggattttgcagttgatgaactgaatgaaatttcagacaatcatgatgatgacagttct |
352 |
Q |
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| T |
35262725 |
gatgaagattttgcagttgatgaactgaatgaaatttcagacaatcatgatgatgacagttct |
35262787 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 139; Significance: 1e-72; HSPs: 7)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 2 - 352
Target Start/End: Complemental strand, 16992851 - 16992513
Alignment:
| Q |
2 |
ggaaagtttgttgatgaaaagcgtgagagggaacaagataacccggtttcgataagttcagatgagtacggtgaaagtgatgaagaacactttgttgatt |
101 |
Q |
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| T |
16992851 |
ggaaagtttgttgatgaaaagtgtg---gggcacaagataacctgatttcgataaattcagatgagtatggtgaaagtga---agaacactctgttgatt |
16992758 |
T |
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| Q |
102 |
ctgatgctgataatgaagaagaagnnnnnnnngaagatgatgctgttaaagagggagtaaaaagtgatgaaagtgggggaattggtaggttttctgataa |
201 |
Q |
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| T |
16992757 |
ctgatcctgataacgaagaagaagaaaaagaaaaagaaaaagcagat---gatgttgttaaaagtgatgaaagtgggggaattggtaggttttctgatca |
16992661 |
T |
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| Q |
202 |
aggtgaaaaggttataattgatttggatgattctgaagagagtgaggaggaggatgattctgatgagagtgaagaaaatgactctagtgatgaggatttt |
301 |
Q |
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| T |
16992660 |
aggtgaaaaggttataattgatttggatgattctgaagagagt---aaggaggatgattcggataagagtgaagcaaatgattctagtgatgaagatttt |
16992564 |
T |
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| Q |
302 |
gcagttgatgaactgaatgaaatttcagacaatcatgatgatgacagttct |
352 |
Q |
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| ||||||||| | |||||| |||||||||||| |||| |||||| ||||| |
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| T |
16992563 |
gaagttgatgagccgaatgagatttcagacaatgatgacgatgactgttct |
16992513 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 36 - 175
Target Start/End: Complemental strand, 17008576 - 17008437
Alignment:
| Q |
36 |
aagataacccggtttcgataagttcagatgagtacggtgaaagtgatgaagaacactttgttgattctgatgctgataatgaagaagaagnnnnnnnnga |
135 |
Q |
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||||||||||| |||| ||| |||| |||||||| |||| |||||||||||||||| ||||| || || || ||||||||||||||||| || |
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| T |
17008576 |
aagataacccgatttcaatatgttctgatgagtatagtgagagtgatgaagaacactctgttggttttggtggtgataatgaagaagaagaagaaaaaga |
17008477 |
T |
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| Q |
136 |
agatgatgctgttaaagagggagtaaaaagtgatgaaagt |
175 |
Q |
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| T |
17008476 |
aggtgatgatgttaaagagggagtaaaaaaggatgaaagt |
17008437 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 256 - 339
Target Start/End: Original strand, 10601660 - 10601743
Alignment:
| Q |
256 |
tgattctgatgagagtgaagaaaatgactctagtgatgaggattttgcagttgatgaactgaatgaaatttcagacaatcatga |
339 |
Q |
| |
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|||||||||||| |||||||||||||| |||| |||||||||||| ||||||||| |||||||| ||||| |||||| |||| |
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| T |
10601660 |
tgattctgatgaaagtgaagaaaatgagactagcgatgaggattttagagttgatgagctgaatgagatttctgacaatgatga |
10601743 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 257 - 342
Target Start/End: Complemental strand, 17008208 - 17008123
Alignment:
| Q |
257 |
gattctgatgagagtgaagaaaatgactctagtgatgaggattttgcagttgatgaactgaatgaaatttcagacaatcatgatga |
342 |
Q |
| |
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||||||||||||||||| || ||| ||||||||||| |||||| |||||| || |||||||| ||||| |||||| ||||||| |
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| T |
17008208 |
gattctgatgagagtgaggatggtgattctagtgatgaagattttaaagttgaggagctgaatgagatttctgacaatgatgatga |
17008123 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 58 - 92
Target Start/End: Complemental strand, 16969134 - 16969100
Alignment:
| Q |
58 |
ttcagatgagtacggtgaaagtgatgaagaacact |
92 |
Q |
| |
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|||||||||||| |||||||||||||||||||||| |
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| T |
16969134 |
ttcagatgagtatggtgaaagtgatgaagaacact |
16969100 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 36 - 125
Target Start/End: Complemental strand, 16978339 - 16978250
Alignment:
| Q |
36 |
aagataacccggtttcgataagttcagatgagtacggtgaaagtgatgaagaacactttgttgattctgatgctgataatgaagaagaag |
125 |
Q |
| |
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||||||| ||| |||| ||| |||| |||||||| | ||| |||||||||||||| | ||||| || || | ||||||||||||||||| |
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| T |
16978339 |
aagataatccgatttcaataggttctgatgagtatgatgagagtgatgaagaacattctgttgcttttggcggtgataatgaagaagaag |
16978250 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 137 - 185
Target Start/End: Complemental strand, 17008274 - 17008226
Alignment:
| Q |
137 |
gatgatgctgttaaagagggagtaaaaagtgatgaaagtgggggaattg |
185 |
Q |
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||||||| |||||| || ||||||||||| ||||||||||| ||||||| |
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| T |
17008274 |
gatgatgatgttaacgaaggagtaaaaagcgatgaaagtggaggaattg |
17008226 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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