View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9703_low_26 (Length: 362)

Name: NF9703_low_26
Description: NF9703
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9703_low_26
NF9703_low_26
[»] chr1 (3 HSPs)
chr1 (10-362)||(9581858-9582210)
chr1 (72-232)||(9587478-9587638)
chr1 (10-56)||(9587428-9587474)
[»] chr5 (1 HSPs)
chr5 (184-233)||(29022133-29022182)
[»] chr4 (5 HSPs)
chr4 (178-225)||(533098-533145)
chr4 (104-150)||(548271-548317)
chr4 (172-233)||(645434-645495)
chr4 (181-222)||(6007763-6007804)
chr4 (181-225)||(1547373-1547417)
[»] chr8 (1 HSPs)
chr8 (183-228)||(17642611-17642656)
[»] chr7 (1 HSPs)
chr7 (172-233)||(15091276-15091337)
[»] chr2 (1 HSPs)
chr2 (173-214)||(13641998-13642039)
[»] chr6 (1 HSPs)
chr6 (92-160)||(10578786-10578854)


Alignment Details
Target: chr1 (Bit Score: 221; Significance: 1e-121; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 10 - 362
Target Start/End: Original strand, 9581858 - 9582210
Alignment:
Q  10 ggaggtgaggttggtgaatctttggaagaggccatagggaagagggtgtgttgattcacagcaggcaggcacagccaaagaaaataggaaaccgttggta 109  Q
    |||||||||||||||||||||||||||||||| | |||||||| || |||||||||||| || ||  | ||| || ||||||||||||| |||||||||     
T  9581858 ggaggtgaggttggtgaatctttggaagaggcgagagggaagaaggcgtgttgattcactgccggaggacacggcgaaagaaaataggagaccgttggtg 9581957  T
Q  110 atggagagtaactgtttggagacaacagaaagagacttcaaatagaaaccatggttggcatcgttgtcgtcgatgaggaatttgaagacggattcccaac 209  Q
    || ||||| |||||||||||||| |||||||||||||| || |||||||||| ||||   ||||||||||| ||||||||||||||||||||||||||||    
T  9581958 atagagagaaactgtttggagacgacagaaagagacttgaagtagaaaccattgttgatgtcgttgtcgtcaatgaggaatttgaagacggattcccaac 9582057  T
Q  210 actcgttaggtaaataaaaatctgttggtggaaccgccattgtgttttttcttcttctttttgagtcactagacattgatatttttctaaaaggagtcat 309  Q
    | || |||||||||||||||||||||| || ||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  9582058 agtcattaggtaaataaaaatctgttgctgcaaccgccattgcgtttcttcttcttctttttgagtcactagacattgatatttttctataaggagtcat 9582157  T
Q  310 cggtgactgaaccttactattgtttgagatagcagagaggttgtgtgactgcc 362  Q
    || |||||||||||||| ||||||||||||||||||||||||||||| |||||    
T  9582158 cgatgactgaaccttacaattgtttgagatagcagagaggttgtgtggctgcc 9582210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 72 - 232
Target Start/End: Original strand, 9587478 - 9587638
Alignment:
Q  72 aggcaggcacagccaaagaaaataggaaaccgttggtaatggagagtaactgtttggagacaacagaaagagacttcaaatagaaaccatggttggcatc 171  Q
    ||||||||||||||||||||||||||| ||| ||||| | |||||| |||||||||||||| |||||||||||||| || |||| ||||| |||| | ||    
T  9587478 aggcaggcacagccaaagaaaataggagaccattggtgacggagagaaactgtttggagacgacagaaagagacttgaagtagacaccatcgttgacgtc 9587577  T
Q  172 gttgtcgtcgatgaggaatttgaagacggattcccaacactcgttaggtaaataaaaatct 232  Q
    |||| |||| |||| |||||||||||| ||||||||||  || || |||||| ||||||||    
T  9587578 gttgccgtctatgaagaatttgaagacagattcccaacggtcattgggtaaagaaaaatct 9587638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 10 - 56
Target Start/End: Original strand, 9587428 - 9587474
Alignment:
Q  10 ggaggtgaggttggtgaatctttggaagaggccatagggaagagggt 56  Q
    |||||||||||||||||||||||| |||| || | ||||||||||||    
T  9587428 ggaggtgaggttggtgaatctttgaaagacgcgagagggaagagggt 9587474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 184 - 233
Target Start/End: Original strand, 29022133 - 29022182
Alignment:
Q  184 gaggaatttgaagacggattcccaacactcgttaggtaaataaaaatctg 233  Q
    |||||||||||||| | ||||||||||||||| ||||||||||| |||||    
T  29022133 gaggaatttgaagatgcattcccaacactcgtcaggtaaataaagatctg 29022182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 32; Significance: 0.000000008; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 178 - 225
Target Start/End: Original strand, 533098 - 533145
Alignment:
Q  178 gtcgatgaggaatttgaagacggattcccaacactcgttaggtaaata 225  Q
    |||||||| |||||||||||| ||||||||||||||||  ||||||||    
T  533098 gtcgatgacgaatttgaagacagattcccaacactcgtcgggtaaata 533145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 104 - 150
Target Start/End: Original strand, 548271 - 548317
Alignment:
Q  104 ttggtaatggagagtaactgtttggagacaacagaaagagacttcaa 150  Q
    ||||| |||||||| |||||||| ||||||||||| |||||||||||    
T  548271 ttggtgatggagagaaactgttttgagacaacagagagagacttcaa 548317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 172 - 233
Target Start/End: Original strand, 645434 - 645495
Alignment:
Q  172 gttgtcgtcgatgaggaatttgaagacggattcccaacactcgttaggtaaataaaaatctg 233  Q
    |||||||| |||||||||| |||||||  || ||||||| || | |||||||||||||||||    
T  645434 gttgtcgttgatgaggaatctgaagacacatacccaacaatcataaggtaaataaaaatctg 645495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 181 - 222
Target Start/End: Original strand, 6007763 - 6007804
Alignment:
Q  181 gatgaggaatttgaagacggattcccaacactcgttaggtaa 222  Q
    |||||||||||||||||  ||||||||||| |||||||||||    
T  6007763 gatgaggaatttgaagatagattcccaacattcgttaggtaa 6007804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 181 - 225
Target Start/End: Complemental strand, 1547417 - 1547373
Alignment:
Q  181 gatgaggaatttgaagacggattcccaacactcgttaggtaaata 225  Q
    ||||| |||||||||||  |||||||||||||||| |||||||||    
T  1547417 gatgatgaatttgaagatagattcccaacactcgtcaggtaaata 1547373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 183 - 228
Target Start/End: Complemental strand, 17642656 - 17642611
Alignment:
Q  183 tgaggaatttgaagacggattcccaacactcgttaggtaaataaaa 228  Q
    |||||||||||||||| || ||||||||||| | ||||||||||||    
T  17642656 tgaggaatttgaagacagactcccaacactcatcaggtaaataaaa 17642611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 172 - 233
Target Start/End: Complemental strand, 15091337 - 15091276
Alignment:
Q  172 gttgtcgtcgatgaggaatttgaagacggattcccaacactcgttaggtaaataaaaatctg 233  Q
    |||||||| ||||| |||| |||||||| ||||||||||||| |  |||||||| |||||||    
T  15091337 gttgtcgttgatgatgaatctgaagacgcattcccaacactcatcgggtaaatagaaatctg 15091276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 173 - 214
Target Start/End: Original strand, 13641998 - 13642039
Alignment:
Q  173 ttgtcgtcgatgaggaatttgaagacggattcccaacactcg 214  Q
    ||||||| |||||| ||||||||||| |||||||||||||||    
T  13641998 ttgtcgtggatgagaaatttgaagaccgattcccaacactcg 13642039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 92 - 160
Target Start/End: Complemental strand, 10578854 - 10578786
Alignment:
Q  92 aataggaaaccgttggtaatggagagtaactgtttggagacaacagaaagagacttcaaatagaaacca 160  Q
    ||||||| || |||||| |||||||| || ||||||||||| | ||| ||||| ||||||||| |||||    
T  10578854 aataggagactgttggttatggagaggaattgtttggagacgagagatagagaattcaaatagtaacca 10578786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University