View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9703_low_27 (Length: 362)

Name: NF9703_low_27
Description: NF9703
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9703_low_27
NF9703_low_27
[»] chr7 (12 HSPs)
chr7 (230-354)||(45402197-45402321)
chr7 (230-343)||(21405367-21405480)
chr7 (243-354)||(6796726-6796837)
chr7 (233-301)||(46025016-46025084)
chr7 (236-301)||(27334694-27334759)
chr7 (233-301)||(39006846-39006914)
chr7 (233-299)||(16932561-16932627)
chr7 (233-299)||(16937944-16938010)
chr7 (233-300)||(46345864-46345931)
chr7 (281-328)||(12286680-12286727)
chr7 (233-301)||(44140074-44140142)
chr7 (233-299)||(33798691-33798757)
[»] chr4 (16 HSPs)
chr4 (230-354)||(20581921-20582045)
chr4 (230-343)||(34986854-34986967)
chr4 (230-354)||(20581597-20581720)
chr4 (232-354)||(2847274-2847397)
chr4 (237-301)||(25573240-25573304)
chr4 (233-300)||(6385367-6385434)
chr4 (233-301)||(9551583-9551650)
chr4 (233-301)||(21098088-21098156)
chr4 (241-292)||(30779445-30779496)
chr4 (233-298)||(48076932-48076997)
chr4 (233-301)||(18924243-18924311)
chr4 (233-301)||(22180226-22180294)
chr4 (281-324)||(14499287-14499330)
chr4 (233-292)||(50562690-50562749)
chr4 (233-301)||(24687299-24687367)
chr4 (267-303)||(27765242-27765278)
[»] chr1 (8 HSPs)
chr1 (230-354)||(20481434-20481558)
chr1 (263-354)||(13591088-13591179)
chr1 (233-301)||(23319035-23319103)
chr1 (233-291)||(45890559-45890617)
chr1 (248-301)||(16117003-16117056)
chr1 (237-292)||(37643096-37643151)
chr1 (233-270)||(33097904-33097941)
chr1 (233-301)||(18057765-18057833)
[»] scaffold0006 (1 HSPs)
scaffold0006 (230-354)||(209941-210065)
[»] scaffold0460 (1 HSPs)
scaffold0460 (230-354)||(2235-2359)
[»] chr5 (10 HSPs)
chr5 (230-354)||(15912397-15912520)
chr5 (231-354)||(39055780-39055903)
chr5 (230-335)||(37857459-37857564)
chr5 (232-354)||(7183817-7183938)
chr5 (230-354)||(33869394-33869518)
chr5 (233-301)||(16667678-16667746)
chr5 (233-301)||(13363750-13363818)
chr5 (236-301)||(23334733-23334798)
chr5 (252-301)||(23948539-23948588)
chr5 (63-112)||(6829502-6829551)
[»] chr2 (7 HSPs)
chr2 (230-343)||(24023970-24024083)
chr2 (233-298)||(36635775-36635840)
chr2 (233-301)||(43823831-43823899)
chr2 (237-300)||(4280697-4280760)
chr2 (248-299)||(25996047-25996098)
chr2 (237-299)||(28478210-28478271)
chr2 (67-112)||(22898872-22898917)
[»] scaffold0717 (1 HSPs)
scaffold0717 (230-354)||(6521-6645)
[»] scaffold0012 (1 HSPs)
scaffold0012 (230-354)||(119817-119941)
[»] scaffold0074 (1 HSPs)
scaffold0074 (230-335)||(35780-35885)
[»] chr6 (7 HSPs)
chr6 (233-335)||(32557094-32557195)
chr6 (60-112)||(28710110-28710162)
chr6 (233-301)||(18612318-18612386)
chr6 (281-329)||(18755699-18755746)
chr6 (241-292)||(25119208-25119259)
chr6 (281-324)||(28132744-28132787)
chr6 (237-291)||(4101989-4102043)
[»] chr3 (13 HSPs)
chr3 (230-335)||(9639866-9639970)
chr3 (283-354)||(32233593-32233664)
chr3 (233-303)||(16276689-16276759)
chr3 (233-301)||(8719093-8719161)
chr3 (233-301)||(9070980-9071048)
chr3 (249-301)||(47729138-47729190)
chr3 (236-288)||(28299230-28299282)
chr3 (233-301)||(23700059-23700126)
chr3 (233-301)||(23718514-23718581)
chr3 (233-301)||(23736970-23737037)
chr3 (241-301)||(51681216-51681278)
chr3 (230-287)||(32233757-32233814)
chr3 (233-270)||(53595570-53595607)
[»] chr8 (8 HSPs)
chr8 (233-301)||(15259875-15259943)
chr8 (233-285)||(1672743-1672795)
chr8 (237-297)||(7614782-7614842)
chr8 (241-301)||(24472983-24473043)
chr8 (241-303)||(45409508-45409570)
chr8 (281-324)||(17232842-17232885)
chr8 (281-324)||(40004754-40004797)
chr8 (281-324)||(42434527-42434570)
[»] scaffold0009 (1 HSPs)
scaffold0009 (237-301)||(202936-203000)
[»] scaffold0221 (1 HSPs)
scaffold0221 (281-324)||(20520-20563)
[»] scaffold1251 (1 HSPs)
scaffold1251 (281-326)||(438-483)
[»] scaffold0455 (1 HSPs)
scaffold0455 (281-324)||(10650-10693)
[»] scaffold0050 (1 HSPs)
scaffold0050 (281-319)||(21013-21051)
[»] scaffold0194 (1 HSPs)
scaffold0194 (233-301)||(28631-28699)


Alignment Details
Target: chr7 (Bit Score: 105; Significance: 2e-52; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 230 - 354
Target Start/End: Original strand, 45402197 - 45402321
Alignment:
Q  230 ggcatccttatgcaccccgcataaatcccaactcattaaccggtagcccaacataattgcttcgtacaccccaacccattttgtcatacatccccaagcg 329  Q
    ||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  45402197 ggcatccttatgcaccctgcataaatcccaacccattaaccggtagcccaacataattgcttcgtacaccccaacccattttgtcatacacccccaagcg 45402296  T
Q  330 aaaccacaattccatttcttcatct 354  Q
    ||||||||||| | |||||||||||    
T  45402297 aaaccacaatttcgtttcttcatct 45402321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 230 - 343
Target Start/End: Original strand, 21405367 - 21405480
Alignment:
Q  230 ggcatccttatgcaccccgcataaatcccaactcattaaccggtagcccaacataattgcttcgtacaccccaacccattttgtcatacatccccaagcg 329  Q
    ||||||||||||||||| ||||||||| ||   ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| || |||||     
T  21405367 ggcatccttatgcaccctgcataaatcacagtccattaaccggtagcccaacataattgcttcgtacatcccaacccattttgtcatacaccctcaagca 21405466  T
Q  330 aaaccacaattcca 343  Q
    ||||||||||||||    
T  21405467 aaaccacaattcca 21405480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 243 - 354
Target Start/End: Original strand, 6796726 - 6796837
Alignment:
Q  243 accccgcataaatcccaactcattaaccggtagcccaacataattgcttcgtacaccccaacccattttgtcatacatccccaagcgaaaccacaattcc 342  Q
    |||| ||||||||| || | |||||||||||  ||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  6796726 accctgcataaatctcagcccattaaccggtgacccaacataattgattcgtacaccccaacccattttgtcatacacccccaagcgaaaccacaattcc 6796825  T
Q  343 atttcttcatct 354  Q
     |||||||||||    
T  6796826 gtttcttcatct 6796837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 233 - 301
Target Start/End: Complemental strand, 46025084 - 46025016
Alignment:
Q  233 atccttatgcaccccgcataaatcccaactcattaaccggtagcccaacataattgcttcgtacacccc 301  Q
    |||| ||||||||  |||||||||| |||||||||||||||||||||||||||||||||| ||||||||    
T  46025084 atccctatgcaccgtgcataaatcctaactcattaaccggtagcccaacataattgcttcctacacccc 46025016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 236 - 301
Target Start/End: Original strand, 27334694 - 27334759
Alignment:
Q  236 cttatgcaccccgcataaatcccaactcattaaccggtagcccaacataattgcttcgtacacccc 301  Q
    ||||||||||| |||||| ||||| | |||||| ||||||||||||||||||||||||||||||||    
T  27334694 cttatgcaccctgcataagtcccagcccattaatcggtagcccaacataattgcttcgtacacccc 27334759  T

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Target: chr7; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 233 - 301
Target Start/End: Original strand, 39006846 - 39006914
Alignment:
Q  233 atccttatgcaccccgcataaatcccaactcattaaccggtagcccaacataattgcttcgtacacccc 301  Q
    |||||||||||||| ||||| |||||| ||||||||||| ||||| ||||||||||||| |||||||||    
T  39006846 atccttatgcaccctgcatagatcccagctcattaaccgatagcctaacataattgctttgtacacccc 39006914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 233 - 299
Target Start/End: Complemental strand, 16932627 - 16932561
Alignment:
Q  233 atccttatgcaccccgcataaatcccaactcattaaccggtagcccaacataattgcttcgtacacc 299  Q
    |||||||||||| | |||||| || |||| |||||||||||||||||||||||||||||| ||||||    
T  16932627 atccttatgcactctgcataagtctcaacccattaaccggtagcccaacataattgcttcctacacc 16932561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 233 - 299
Target Start/End: Complemental strand, 16938010 - 16937944
Alignment:
Q  233 atccttatgcaccccgcataaatcccaactcattaaccggtagcccaacataattgcttcgtacacc 299  Q
    |||||||||||| | |||||| || |||| |||||||||||||||||||||||||||||| ||||||    
T  16938010 atccttatgcactctgcataagtctcaacccattaaccggtagcccaacataattgcttcctacacc 16937944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 233 - 300
Target Start/End: Original strand, 46345864 - 46345931
Alignment:
Q  233 atccttatgcaccccgcataaatcccaactcattaaccggtagcccaacataattgcttcgtacaccc 300  Q
    |||||||||||| | |||||| || || || ||||||||||||||||||||||||||||| |||||||    
T  46345864 atccttatgcacgctgcataagtctcagcttattaaccggtagcccaacataattgcttcctacaccc 46345931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 281 - 328
Target Start/End: Complemental strand, 12286727 - 12286680
Alignment:
Q  281 cataattgcttcgtacaccccaacccattttgtcatacatccccaagc 328  Q
    ||||||||||||||||||||||||||||| | ||||||| ||||||||    
T  12286727 cataattgcttcgtacaccccaacccattctctcatacacccccaagc 12286680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 233 - 301
Target Start/End: Original strand, 44140074 - 44140142
Alignment:
Q  233 atccttatgcaccccgcataaatcccaactcattaaccggtagcccaacataattgcttcgtacacccc 301  Q
    |||||||||||||| |||  | |||||   |||||||||||||||||||||||||||||| | ||||||    
T  44140074 atccttatgcaccctgcaacagtcccagtccattaaccggtagcccaacataattgcttccttcacccc 44140142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 233 - 299
Target Start/End: Complemental strand, 33798757 - 33798691
Alignment:
Q  233 atccttatgcaccccgcataaatcccaactcattaaccggtagcccaacataattgcttcgtacacc 299  Q
    |||||||||||||   | ||||||| | | ||||||||| |||||||||||||||||||| ||||||    
T  33798757 atccttatgcaccgtacgtaaatccaagcccattaaccgatagcccaacataattgcttcctacacc 33798691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 101; Significance: 5e-50; HSPs: 16)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 230 - 354
Target Start/End: Original strand, 20581921 - 20582045
Alignment:
Q  230 ggcatccttatgcaccccgcataaatcccaactcattaaccggtagcccaacataattgcttcgtacaccccaacccattttgtcatacatccccaagcg 329  Q
    ||||||||||||||||  |||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  20581921 ggcatccttatgcaccttgcataaatcccaacccattaaccggtagtccaacataattgcttcgtacaccccaacccattttgtcatacacccccaagcg 20582020  T
Q  330 aaaccacaattccatttcttcatct 354  Q
    ||||||||||||| |||||||||||    
T  20582021 aaaccacaattccgtttcttcatct 20582045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 230 - 343
Target Start/End: Complemental strand, 34986967 - 34986854
Alignment:
Q  230 ggcatccttatgcaccccgcataaatcccaactcattaaccggtagcccaacataattgcttcgtacaccccaacccattttgtcatacatccccaagcg 329  Q
    ||||||||||||||||| ||||||| | || | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||    
T  34986967 ggcatccttatgcaccctgcataaaacacagcccattaaccggtagcccaacataattgcttcgtacaccccaacccattttgtcatacaccccccagcg 34986868  T
Q  330 aaaccacaattcca 343  Q
    ||||||||||||||    
T  34986867 aaaccacaattcca 34986854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 230 - 354
Target Start/End: Original strand, 20581597 - 20581720
Alignment:
Q  230 ggcatccttatgcaccccgcataaatcccaactcattaaccggtagcccaacataattgcttcgtacaccccaacccattttgtcatacatccccaagcg 329  Q
    ||||||||||| ||||  ||||||||| || | ||||||||||||| |||||||||||| |||||||||||||||||||||||||||||| |||||||||    
T  20581597 ggcatccttatacaccttgcataaatctcagcccattaaccggtagtccaacataattggttcgtacaccccaacccattttgtcataca-ccccaagcg 20581695  T
Q  330 aaaccacaattccatttcttcatct 354  Q
    ||||||||||||| |||||||||||    
T  20581696 aaaccacaattccgtttcttcatct 20581720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 232 - 354
Target Start/End: Original strand, 2847274 - 2847397
Alignment:
Q  232 catccttatgcaccccgcataaatcccaactcatt--aaccggtagcccaacataattgcttcgtacaccccaacccattttgtcatacatccccaagcg 329  Q
    ||||||||| ||||| |||||||||||| | ||||  ||||||||||||||||||||||||||||||| ||||| |||||||||| |||| ||||||| |    
T  2847274 catccttatacaccctgcataaatcccagcccattttaaccggtagcccaacataattgcttcgtaca-cccaatccattttgtcgtacacccccaagag 2847372  T
Q  330 aaaccacaattccatttcttcatct 354  Q
    ||||||||||||| ||| |||||||    
T  2847373 aaaccacaattccgttttttcatct 2847397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 237 - 301
Target Start/End: Original strand, 25573240 - 25573304
Alignment:
Q  237 ttatgcaccccgcataaatcccaactcattaaccggtagcccaacataattgcttcgtacacccc 301  Q
    |||||||||| |||||||||||| | |||||||||||||||||||||||||||||||||||||||    
T  25573240 ttatgcaccctgcataaatcccagcccattaaccggtagcccaacataattgcttcgtacacccc 25573304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 233 - 300
Target Start/End: Original strand, 6385367 - 6385434
Alignment:
Q  233 atccttatgcaccccgcataaatcccaactcattaaccggtagcccaacataattgcttcgtacaccc 300  Q
    |||||||||||||| |||||| || || | |||||||||||||||||||||||||||||| |||||||    
T  6385367 atccttatgcaccctgcataagtcacagcccattaaccggtagcccaacataattgcttcatacaccc 6385434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 233 - 301
Target Start/End: Original strand, 9551583 - 9551650
Alignment:
Q  233 atccttatgcaccccgcataaatcccaactcattaaccggtagcccaacataattgcttcgtacacccc 301  Q
    |||||||||||||| |||||| ||| | ||||||||| |||||||||||||||||||||| ||||||||    
T  9551583 atccttatgcaccctgcataagtcc-agctcattaactggtagcccaacataattgcttcctacacccc 9551650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 233 - 301
Target Start/End: Complemental strand, 21098156 - 21098088
Alignment:
Q  233 atccttatgcaccccgcataaatcccaactcattaaccggtagcccaacataattgcttcgtacacccc 301  Q
    |||||||||||||  ||||||||| || | ||||||| |||||||||||||||||||||| ||||||||    
T  21098156 atccttatgcaccatgcataaatcacagcccattaactggtagcccaacataattgcttcatacacccc 21098088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 241 - 292
Target Start/End: Original strand, 30779445 - 30779496
Alignment:
Q  241 gcaccccgcataaatcccaactcattaaccggtagcccaacataattgcttc 292  Q
    |||||| |||||||||||| | ||||||||||||||||||||||||||||||    
T  30779445 gcaccctgcataaatcccagcccattaaccggtagcccaacataattgcttc 30779496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 233 - 298
Target Start/End: Original strand, 48076932 - 48076997
Alignment:
Q  233 atccttatgcaccccgcataaatcccaactcattaaccggtagcccaacataattgcttcgtacac 298  Q
    |||||||||||||  |||||||||||| | ||||||||||||| |||||||||||| ||| |||||    
T  48076932 atccttatgcaccgtgcataaatcccagcccattaaccggtagtccaacataattgattcctacac 48076997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 233 - 301
Target Start/End: Complemental strand, 18924311 - 18924243
Alignment:
Q  233 atccttatgcaccccgcataaatcccaactcattaaccggtagcccaacataattgcttcgtacacccc 301  Q
    |||||||||||||  |||||||| ||| | ||||||||||||| |||||||||||| ||| ||||||||    
T  18924311 atccttatgcaccgtgcataaattccagcccattaaccggtagtccaacataattgtttcctacacccc 18924243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 233 - 301
Target Start/End: Original strand, 22180226 - 22180294
Alignment:
Q  233 atccttatgcaccccgcataaatcccaactcattaaccggtagcccaacataattgcttcgtacacccc 301  Q
    |||||||||||||  |||||||||||| | |||||| |||||| |||||||||||| ||| ||||||||    
T  22180226 atccttatgcaccgtgcataaatcccagcccattaatcggtaggccaacataattgtttcctacacccc 22180294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 281 - 324
Target Start/End: Original strand, 14499287 - 14499330
Alignment:
Q  281 cataattgcttcgtacaccccaacccattttgtcatacatcccc 324  Q
    |||||||||||| |||||||||||||||||||||||||| ||||    
T  14499287 cataattgcttcctacaccccaacccattttgtcatacaccccc 14499330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 233 - 292
Target Start/End: Original strand, 50562690 - 50562749
Alignment:
Q  233 atccttatgcaccccgcataaatcccaactcattaaccggtagcccaacataattgcttc 292  Q
    ||||||||||| |  |||||||||||| | |||||||||||||| |||||||||||||||    
T  50562690 atccttatgcatcgtgcataaatcccagcccattaaccggtagctcaacataattgcttc 50562749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 233 - 301
Target Start/End: Complemental strand, 24687367 - 24687299
Alignment:
Q  233 atccttatgcaccccgcataaatcccaactcattaaccggtagcccaacataattgcttcgtacacccc 301  Q
    ||||||||||| |  |||||| || || | ||||||||||||||||| |||||||||||| ||||||||    
T  24687367 atccttatgcatcatgcataagtctcagcccattaaccggtagcccatcataattgcttcctacacccc 24687299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 267 - 303
Target Start/End: Complemental strand, 27765278 - 27765242
Alignment:
Q  267 aaccggtagcccaacataattgcttcgtacaccccaa 303  Q
    |||||||||||||||||||||||||| ||||||||||    
T  27765278 aaccggtagcccaacataattgcttcctacaccccaa 27765242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 101; Significance: 5e-50; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 230 - 354
Target Start/End: Complemental strand, 20481558 - 20481434
Alignment:
Q  230 ggcatccttatgcaccccgcataaatcccaactcattaaccggtagcccaacataattgcttcgtacaccccaacccattttgtcatacatccccaagcg 329  Q
    |||||| |||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  20481558 ggcatcattatgcaccctgcataaatcccaacccattaaccggtagcccaacataattgcttcgtacaccccaacccattttgtcatacacccccaagcg 20481459  T
Q  330 aaaccacaattccatttcttcatct 354  Q
    ||||||||||||| || ||||||||    
T  20481458 aaaccacaattccgttacttcatct 20481434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 263 - 354
Target Start/End: Complemental strand, 13591179 - 13591088
Alignment:
Q  263 cattaaccggtagcccaacataattgcttcgtacaccccaacccattttgtcatacatccccaagcgaaaccacaattccatttcttcatct 354  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||    
T  13591179 cattaaccggtatcccaacataattgcttcgtacaccccaacccattttgtcatacacccccaagcgaaaccacaattccgtttcttcatct 13591088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 233 - 301
Target Start/End: Original strand, 23319035 - 23319103
Alignment:
Q  233 atccttatgcaccccgcataaatcccaactcattaaccggtagcccaacataattgcttcgtacacccc 301  Q
    ||||||||||||   ||||||||| || | |||||||||||||||||||||||||||||| ||||||||    
T  23319035 atccttatgcactgtgcataaatctcagcccattaaccggtagcccaacataattgcttcctacacccc 23319103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 233 - 291
Target Start/End: Complemental strand, 45890617 - 45890559
Alignment:
Q  233 atccttatgcaccccgcataaatcccaactcattaaccggtagcccaacataattgctt 291  Q
    |||||||||||||  |||||||| ||| | |||||||||||||||||||||||||||||    
T  45890617 atccttatgcaccgtgcataaattccagcccattaaccggtagcccaacataattgctt 45890559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 248 - 301
Target Start/End: Complemental strand, 16117056 - 16117003
Alignment:
Q  248 gcataaatcccaactcattaaccggtagcccaacataattgcttcgtacacccc 301  Q
    |||||||||||  | ||||||||||||| |||||||||||||||| ||||||||    
T  16117056 gcataaatccctgcccattaaccggtagtccaacataattgcttcctacacccc 16117003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 237 - 292
Target Start/End: Complemental strand, 37643151 - 37643096
Alignment:
Q  237 ttatgcaccccgcataaatcccaactcattaaccggtagcccaacataattgcttc 292  Q
    |||||||||  ||||| |||||| ||||||||| | ||||||||||||||||||||    
T  37643151 ttatgcaccgtgcatacatcccagctcattaactgatagcccaacataattgcttc 37643096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 233 - 270
Target Start/End: Complemental strand, 33097941 - 33097904
Alignment:
Q  233 atccttatgcaccccgcataaatcccaactcattaacc 270  Q
    |||||||||||||| |||||||||||||| ||||||||    
T  33097941 atccttatgcaccctgcataaatcccaacccattaacc 33097904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 233 - 301
Target Start/End: Complemental strand, 18057833 - 18057765
Alignment:
Q  233 atccttatgcaccccgcataaatcccaactcattaaccggtagcccaacataattgcttcgtacacccc 301  Q
    |||||||||||||  |||||||||||| |  ||||||| |||  |||||||| ||||||| ||||||||    
T  18057833 atccttatgcaccgtgcataaatcccagcctattaaccagtaatccaacatatttgcttcctacacccc 18057765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006 (Bit Score: 97; Significance: 1e-47; HSPs: 1)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 230 - 354
Target Start/End: Complemental strand, 210065 - 209941
Alignment:
Q  230 ggcatccttatgcaccccgcataaatcccaactcattaaccggtagcccaacataattgcttcgtacaccccaacccattttgtcatacatccccaagcg 329  Q
    ||||||||||||||| | |||||||||||||| ||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||| |||||||||    
T  210065 ggcatccttatgcactctgcataaatcccaacccattaaccggttgcccaacataattgctttgtacaccccaacccattttgtcatacacccccaagcg 209966  T
Q  330 aaaccacaattccatttcttcatct 354  Q
    ||||||||||||| |||||||||||    
T  209965 aaaccacaattccgtttcttcatct 209941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0460 (Bit Score: 93; Significance: 3e-45; HSPs: 1)
Name: scaffold0460
Description:

Target: scaffold0460; HSP #1
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 230 - 354
Target Start/End: Complemental strand, 2359 - 2235
Alignment:
Q  230 ggcatccttatgcaccccgcataaatcccaactcattaaccggtagcccaacataattgcttcgtacaccccaacccattttgtcatacatccccaagcg 329  Q
    |||||| |||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |     
T  2359 ggcatcattatgcaccctgcataaatcccaacccattaaccggtagcccaacataattgcttcgtacaccccaacccattttgtcatacacccccaaaca 2260  T
Q  330 aaaccacaattccatttcttcatct 354  Q
    ||||||||||||| || ||||||||    
T  2259 aaaccacaattccgttacttcatct 2235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 93; Significance: 3e-45; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 230 - 354
Target Start/End: Original strand, 15912397 - 15912520
Alignment:
Q  230 ggcatccttatgcaccccgcataaatcccaactcattaaccggtagcccaacataattgcttcgtacaccccaacccattttgtcatacatccccaagcg 329  Q
    ||||||||||||||||| |||||||||||| | ||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||| | |||||||    
T  15912397 ggcatccttatgcaccctgcataaatcccagcccattaaccgatagcc-aacataattgcttcgtacaccccaacccattttgtcatacacctccaagcg 15912495  T
Q  330 aaaccacaattccatttcttcatct 354  Q
    |||||||||||||||||||||||||    
T  15912496 aaaccacaattccatttcttcatct 15912520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 231 - 354
Target Start/End: Original strand, 39055780 - 39055903
Alignment:
Q  231 gcatccttatgcaccccgcataaatcccaactcattaaccggtagcccaacataattgcttcgtacaccccaacccattttgtcatacatccccaagcga 330  Q
    ||||| |||||||||| |||||||||||  | ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||  |||||||||    
T  39055780 gcatctttatgcaccctgcataaatccccgcccattaaccggtagcccaacataattgcttcgtacacctcaacccattttgtcatacactcccaagcga 39055879  T
Q  331 aaccacaattccatttcttcatct 354  Q
    |||||||||||| |||||||||||    
T  39055880 aaccacaattccgtttcttcatct 39055903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 230 - 335
Target Start/End: Complemental strand, 37857564 - 37857459
Alignment:
Q  230 ggcatccttatgcaccccgcataaatcccaactcattaaccggtagcccaacataattgcttcgtacaccccaacccattttgtcatacatccccaagcg 329  Q
    ||||||||||||||||| |||||||||||| | |||||||||||||||||||||||||| ||| |||||||||||||||||||||||||| |||||||||    
T  37857564 ggcatccttatgcaccctgcataaatcccagcccattaaccggtagcccaacataattgtttcatacaccccaacccattttgtcatacacccccaagcg 37857465  T
Q  330 aaacca 335  Q
    ||||||    
T  37857464 aaacca 37857459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 232 - 354
Target Start/End: Complemental strand, 7183938 - 7183817
Alignment:
Q  232 catccttatgcaccccgcataaatcccaactcattaaccggtagcccaacataattgcttcgtacaccccaacccattttgtcatacatccccaagcgaa 331  Q
    ||||||||||||||| ||||||||| || | ||||||| ||||||| ||||||||||||||||||| |||||| |||||||||||||| |||||||||||    
T  7183938 catccttatgcaccctgcataaatctcagcccattaacaggtagcctaacataattgcttcgtaca-cccaactcattttgtcatacacccccaagcgaa 7183840  T
Q  332 accacaattccatttcttcatct 354  Q
    ||||||||||  |||||||||||    
T  7183839 accacaattctgtttcttcatct 7183817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 230 - 354
Target Start/End: Complemental strand, 33869518 - 33869394
Alignment:
Q  230 ggcatccttatgcaccccgcataaatcccaactcattaaccggtagcccaacataattgcttcgtacaccccaacccattttgtcatacatccccaagcg 329  Q
    |||||| ||||| |||| |||||||||||||  ||||||| | |||| |||||||||||||||||||||||||||||||||| ||||| | |  ||||||    
T  33869518 ggcatctttatgtaccctgcataaatcccaatccattaactgatagctcaacataattgcttcgtacaccccaacccattttatcatataccttcaagcg 33869419  T
Q  330 aaaccacaattccatttcttcatct 354  Q
    ||||||||||||  |||||||||||    
T  33869418 aaaccacaattctgtttcttcatct 33869394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 233 - 301
Target Start/End: Original strand, 16667678 - 16667746
Alignment:
Q  233 atccttatgcaccccgcataaatcccaactcattaaccggtagcccaacataattgcttcgtacacccc 301  Q
    |||||||||||||  |||||||||||| | |||||||||||||||||||||||||||||| ||||||||    
T  16667678 atccttatgcaccgtgcataaatcccagcccattaaccggtagcccaacataattgcttcctacacccc 16667746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 233 - 301
Target Start/End: Complemental strand, 13363818 - 13363750
Alignment:
Q  233 atccttatgcaccccgcataaatcccaactcattaaccggtagcccaacataattgcttcgtacacccc 301  Q
    |||||||||||||  ||||||||||||   |||||||||||||||||||||||||| ||| ||||||||    
T  13363818 atccttatgcaccgtgcataaatcccagtccattaaccggtagcccaacataattgtttcctacacccc 13363750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 236 - 301
Target Start/End: Original strand, 23334733 - 23334798
Alignment:
Q  236 cttatgcaccccgcataaatcccaactcattaaccggtagcccaacataattgcttcgtacacccc 301  Q
    ||||||||||  |||||||||||| | ||||||||||||| ||||||||||| |||| ||||||||    
T  23334733 cttatgcaccgtgcataaatcccagcccattaaccggtagtccaacataatttcttcctacacccc 23334798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 252 - 301
Target Start/End: Complemental strand, 23948588 - 23948539
Alignment:
Q  252 aaatcccaactcattaaccggtagcccaacataattgcttcgtacacccc 301  Q
    |||||||| | |||||||||||||||||||||||||| ||| ||||||||    
T  23948588 aaatcccagcccattaaccggtagcccaacataattgtttcttacacccc 23948539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 63 - 112
Target Start/End: Complemental strand, 6829551 - 6829502
Alignment:
Q  63 aaatcaattttaaatgtaaggatagttttgtaagtttccttcaattaatt 112  Q
    |||||||| ||||| | |||| ||||||||||||||||||| ||||||||    
T  6829551 aaatcaatgttaaacgcaagggtagttttgtaagtttcctttaattaatt 6829502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 90; Significance: 2e-43; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 230 - 343
Target Start/End: Original strand, 24023970 - 24024083
Alignment:
Q  230 ggcatccttatgcaccccgcataaatcccaactcattaaccggtagcccaacataattgcttcgtacaccccaacccattttgtcatacatccccaagcg 329  Q
    ||||||||||||||||| ||||||||| || | ||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  24023970 ggcatccttatgcaccctgcataaatcacagcccattaactggtagcccaacataattgcttcttacaccccaacccattttgtcatacatccccaagcg 24024069  T
Q  330 aaaccacaattcca 343  Q
    ||||||||||||||    
T  24024070 aaaccacaattcca 24024083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 233 - 298
Target Start/End: Original strand, 36635775 - 36635840
Alignment:
Q  233 atccttatgcaccccgcataaatcccaactcattaaccggtagcccaacataattgcttcgtacac 298  Q
    |||||||||||||  ||||||||| || | |||||||||||||||||||||||||||||| |||||    
T  36635775 atccttatgcaccgtgcataaatctcagcccattaaccggtagcccaacataattgcttcatacac 36635840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 233 - 301
Target Start/End: Complemental strand, 43823899 - 43823831
Alignment:
Q  233 atccttatgcaccccgcataaatcccaactcattaaccggtagcccaacataattgcttcgtacacccc 301  Q
    |||||||||||||  |||||||||||| | ||||| ||||||| |||||| ||||||||| ||||||||    
T  43823899 atccttatgcaccgtgcataaatcccagcccattatccggtagtccaacacaattgcttcctacacccc 43823831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 237 - 300
Target Start/End: Original strand, 4280697 - 4280760
Alignment:
Q  237 ttatgcaccccgcataaatcccaactcattaaccggtagcccaacataattgcttcgtacaccc 300  Q
    |||||||||  |||||||| | | |||||||| ||||||||||||||||||||||| |||||||    
T  4280697 ttatgcaccgtgcataaattctagctcattaatcggtagcccaacataattgcttcctacaccc 4280760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 248 - 299
Target Start/End: Complemental strand, 25996098 - 25996047
Alignment:
Q  248 gcataaatcccaactcattaaccggtagcccaacataattgcttcgtacacc 299  Q
    |||||||| ||||| |||||||||||||||||||||||||| ||| ||||||    
T  25996098 gcataaattccaacccattaaccggtagcccaacataattgtttcctacacc 25996047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 237 - 299
Target Start/End: Complemental strand, 28478271 - 28478210
Alignment:
Q  237 ttatgcaccccgcataaatcccaactcattaaccggtagcccaacataattgcttcgtacacc 299  Q
    |||||||||| |||||| ||| ||| ||||||| |||||||||||||||||||||| ||||||    
T  28478271 ttatgcaccctgcataagtcc-aacccattaactggtagcccaacataattgcttcctacacc 28478210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 67 - 112
Target Start/End: Complemental strand, 22898917 - 22898872
Alignment:
Q  67 caattttaaatgtaaggatagttttgtaagtttccttcaattaatt 112  Q
    |||||||||| |||||| ||||||||||||||||||| ||| ||||    
T  22898917 caattttaaacgtaagggtagttttgtaagtttcctttaatcaatt 22898872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0717 (Bit Score: 85; Significance: 2e-40; HSPs: 1)
Name: scaffold0717
Description:

Target: scaffold0717; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 230 - 354
Target Start/End: Original strand, 6521 - 6645
Alignment:
Q  230 ggcatccttatgcaccccgcataaatcccaactcattaaccggtagcccaacataattgcttcgtacaccccaacccattttgtcatacatccccaagcg 329  Q
    ||||||||||||||| | |||||||||||| | ||||||||||||| ||||||||||| ||||||| || |||||||||||||||||||| |||||||||    
T  6521 ggcatccttatgcacactgcataaatcccagcccattaaccggtagtccaacataatttcttcgtatacaccaacccattttgtcatacacccccaagcg 6620  T
Q  330 aaaccacaattccatttcttcatct 354  Q
    ||||||||||||| |||||||||||    
T  6621 aaaccacaattccgtttcttcatct 6645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0012 (Bit Score: 85; Significance: 2e-40; HSPs: 1)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 230 - 354
Target Start/End: Complemental strand, 119941 - 119817
Alignment:
Q  230 ggcatccttatgcaccccgcataaatcccaactcattaaccggtagcccaacataattgcttcgtacaccccaacccattttgtcatacatccccaagcg 329  Q
    ||||||||||||||| | |||||||||||| | ||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||    
T  119941 ggcatccttatgcactctgcataaatcccagcccattaactggtagcccaacataattgctttgtacaccccaacccattttgtcatacacccccaagcg 119842  T
Q  330 aaaccacaattccatttcttcatct 354  Q
     |||||||| ||| |||||||||||    
T  119841 gaaccacaaatccgtttcttcatct 119817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0074 (Bit Score: 78; Significance: 3e-36; HSPs: 1)
Name: scaffold0074
Description:

Target: scaffold0074; HSP #1
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 230 - 335
Target Start/End: Original strand, 35780 - 35885
Alignment:
Q  230 ggcatccttatgcaccccgcataaatcccaactcattaaccggtagcccaacataattgcttcgtacaccccaacccattttgtcatacatccccaagcg 329  Q
    ||||||||||||||||  ||||||||| || ||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||    
T  35780 ggcatccttatgcaccttgcataaatctcagctcattaactggtagcccaacataattgcttcgttcaccccaacccattttgtcatacacccccaagcg 35879  T
Q  330 aaacca 335  Q
    ||||||    
T  35880 aaacca 35885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 71; Significance: 4e-32; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 233 - 335
Target Start/End: Complemental strand, 32557195 - 32557094
Alignment:
Q  233 atccttatgcaccccgcataaatcccaactcattaaccggtagcccaacataattgcttcgtacaccccaacccattttgtcatacatccccaagcgaaa 332  Q
    |||||||||||||| ||||||||| ||   ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||    
T  32557195 atccttatgcaccctgcataaatctcagtccattaaccggtagcccaacataattgcttcgtacaccccaacccattttgtcataca-ccccaagagaaa 32557097  T
Q  333 cca 335  Q
    |||    
T  32557096 cca 32557094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 60 - 112
Target Start/End: Complemental strand, 28710162 - 28710110
Alignment:
Q  60 ttgaaatcaattttaaatgtaaggatagttttgtaagtttccttcaattaatt 112  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28710162 ttgaaatcaattttaaatgtaaggatagttttgtaagtttccttcaattaatt 28710110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 233 - 301
Target Start/End: Complemental strand, 18612386 - 18612318
Alignment:
Q  233 atccttatgcaccccgcataaatcccaactcattaaccggtagcccaacataattgcttcgtacacccc 301  Q
    |||||||||||||   ||||||||||||| |||||||  ||||||||||||||||| ||| ||||||||    
T  18612386 atccttatgcaccgtacataaatcccaacccattaacttgtagcccaacataattgtttcctacacccc 18612318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 281 - 329
Target Start/End: Original strand, 18755699 - 18755746
Alignment:
Q  281 cataattgcttcgtacaccccaacccattttgtcatacatccccaagcg 329  Q
    ||||||||||||||||||||||||||||| ||||||||| |||||||||    
T  18755699 cataattgcttcgtacaccccaacccattatgtcataca-ccccaagcg 18755746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 241 - 292
Target Start/End: Original strand, 25119208 - 25119259
Alignment:
Q  241 gcaccccgcataaatcccaactcattaaccggtagcccaacataattgcttc 292  Q
    |||||| ||||||||| || | |||||||||||||| |||||||||||||||    
T  25119208 gcaccctgcataaatctcagcccattaaccggtagctcaacataattgcttc 25119259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 281 - 324
Target Start/End: Complemental strand, 28132787 - 28132744
Alignment:
Q  281 cataattgcttcgtacaccccaacccattttgtcatacatcccc 324  Q
    |||||||||||| |||||| ||||||||||||||||||| ||||    
T  28132787 cataattgcttcctacacctcaacccattttgtcatacaccccc 28132744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 237 - 291
Target Start/End: Original strand, 4101989 - 4102043
Alignment:
Q  237 ttatgcaccccgcataaatcccaactcattaaccggtagcccaacataattgctt 291  Q
    |||||||||  |||||||||||| | |||||| |||||| |||||||||||||||    
T  4101989 ttatgcaccgtgcataaatcccagcccattaatcggtagtccaacataattgctt 4102043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 66; Significance: 4e-29; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 230 - 335
Target Start/End: Original strand, 9639866 - 9639970
Alignment:
Q  230 ggcatccttatgcaccccgcataaatcccaactcattaaccggtagcccaacataattgcttcgtacaccccaacccattttgtcatacatccccaagcg 329  Q
    ||||||||||||||||| |||||||||||| | |||||||||||||| |||||||||| ||||||||||||||||||| ||||||||||| | ||||| |    
T  9639866 ggcatccttatgcaccctgcataaatcccagcccattaaccggtagctcaacataattacttcgtacaccccaaccca-tttgtcatacacctccaagtg 9639964  T
Q  330 aaacca 335  Q
    ||||||    
T  9639965 aaacca 9639970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 283 - 354
Target Start/End: Complemental strand, 32233664 - 32233593
Alignment:
Q  283 taattgcttcgtacaccccaacccattttgtcatacatccccaagcgaaaccacaattccatttcttcatct 354  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||  |||||| ||||    
T  32233664 taattgcttcgtacaccccaacccattttgtcatacacccccaagcgaaaccacaattctgtttcttaatct 32233593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 233 - 303
Target Start/End: Original strand, 16276689 - 16276759
Alignment:
Q  233 atccttatgcaccccgcataaatcccaactcattaaccggtagcccaacataattgcttcgtacaccccaa 303  Q
    |||||||||||||  |||||||||| | | |||||||||||||||||||||||||||||| ||||||||||    
T  16276689 atccttatgcaccgtgcataaatccaagcccattaaccggtagcccaacataattgcttcctacaccccaa 16276759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 233 - 301
Target Start/End: Complemental strand, 8719161 - 8719093
Alignment:
Q  233 atccttatgcaccccgcataaatcccaactcattaaccggtagcccaacataattgcttcgtacacccc 301  Q
    |||||||||||||  |||||||||||||| |||| |||||||||||| |||||||||||| ||||||||    
T  8719161 atccttatgcaccgtgcataaatcccaacccattgaccggtagcccagcataattgcttcctacacccc 8719093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 233 - 301
Target Start/End: Complemental strand, 9071048 - 9070980
Alignment:
Q  233 atccttatgcaccccgcataaatcccaactcattaaccggtagcccaacataattgcttcgtacacccc 301  Q
    |||||||||||||  |||||||||||||| |||| |||||||||||| |||||||||||| ||||||||    
T  9071048 atccttatgcaccgtgcataaatcccaacccattgaccggtagcccagcataattgcttcctacacccc 9070980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 249 - 301
Target Start/End: Complemental strand, 47729190 - 47729138
Alignment:
Q  249 cataaatcccaactcattaaccggtagcccaacataattgcttcgtacacccc 301  Q
    ||||||||||| | |||||||||||||||||||||||||||||| ||||||||    
T  47729190 cataaatcccagcccattaaccggtagcccaacataattgcttcctacacccc 47729138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 236 - 288
Target Start/End: Original strand, 28299230 - 28299282
Alignment:
Q  236 cttatgcaccccgcataaatcccaactcattaaccggtagcccaacataattg 288  Q
    ||||||||| | |||||| |||||||||||||||||||||| |||||||||||    
T  28299230 cttatgcacactgcataagtcccaactcattaaccggtagctcaacataattg 28299282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 233 - 301
Target Start/End: Complemental strand, 23700126 - 23700059
Alignment:
Q  233 atccttatgcaccccgcataaatcccaactcattaaccggtagcccaacataattgcttcgtacacccc 301  Q
    ||||||||||| |  | |||||||||| | ||||||||| |||||||||||||||||||| ||||||||    
T  23700126 atccttatgcatcgtggataaatcccagcccattaaccg-tagcccaacataattgcttcctacacccc 23700059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 233 - 301
Target Start/End: Complemental strand, 23718581 - 23718514
Alignment:
Q  233 atccttatgcaccccgcataaatcccaactcattaaccggtagcccaacataattgcttcgtacacccc 301  Q
    ||||||||||| |  | |||||||||| | ||||||||| |||||||||||||||||||| ||||||||    
T  23718581 atccttatgcatcgtggataaatcccagcccattaaccg-tagcccaacataattgcttcctacacccc 23718514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 233 - 301
Target Start/End: Complemental strand, 23737037 - 23736970
Alignment:
Q  233 atccttatgcaccccgcataaatcccaactcattaaccggtagcccaacataattgcttcgtacacccc 301  Q
    ||||||||||| |  | |||||||||| | ||||||||| |||||||||||||||||||| ||||||||    
T  23737037 atccttatgcatcgtggataaatcccagcccattaaccg-tagcccaacataattgcttcctacacccc 23736970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 241 - 301
Target Start/End: Original strand, 51681216 - 51681278
Alignment:
Q  241 gcaccccgcataaatcccaactcattaaccggtagcccaacataa--ttgcttcgtacacccc 301  Q
    |||||| ||||||||| || | |||||||||||||||||||||||  ||||||| ||||||||    
T  51681216 gcaccctgcataaatcacagcccattaaccggtagcccaacataattttgcttcctacacccc 51681278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 230 - 287
Target Start/End: Complemental strand, 32233814 - 32233757
Alignment:
Q  230 ggcatccttatgcaccccgcataaatcccaactcattaaccggtagcccaacataatt 287  Q
    ||||||||||||||| | | ||||||| ||   |||||||||||||||||||||||||    
T  32233814 ggcatccttatgcactctgtataaatctcagtccattaaccggtagcccaacataatt 32233757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 233 - 270
Target Start/End: Complemental strand, 53595607 - 53595570
Alignment:
Q  233 atccttatgcaccccgcataaatcccaactcattaacc 270  Q
    |||||||||||||| |||||||||||| ||||||||||    
T  53595607 atccttatgcaccctgcataaatcccagctcattaacc 53595570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 49; Significance: 6e-19; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 233 - 301
Target Start/End: Original strand, 15259875 - 15259943
Alignment:
Q  233 atccttatgcaccccgcataaatcccaactcattaaccggtagcccaacataattgcttcgtacacccc 301  Q
    |||||||||||||  |||||||||||||||||||||||| |||||||||||||||| ||| ||||||||    
T  15259875 atccttatgcaccgtgcataaatcccaactcattaaccgatagcccaacataattgtttcatacacccc 15259943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 233 - 285
Target Start/End: Complemental strand, 1672795 - 1672743
Alignment:
Q  233 atccttatgcaccccgcataaatcccaactcattaaccggtagcccaacataa 285  Q
    |||||||||||||  |||||||||||| | |||||||||||||||||||||||    
T  1672795 atccttatgcaccgtgcataaatcccagcccattaaccggtagcccaacataa 1672743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 237 - 297
Target Start/End: Complemental strand, 7614842 - 7614782
Alignment:
Q  237 ttatgcaccccgcataaatcccaactcattaaccggtagcccaacataattgcttcgtaca 297  Q
    |||||||||  |||||||||| ||| |||||||||||||||||| ||||||||||| ||||    
T  7614842 ttatgcaccgtgcataaatccaaacccattaaccggtagcccaatataattgcttcttaca 7614782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 241 - 301
Target Start/End: Original strand, 24472983 - 24473043
Alignment:
Q  241 gcaccccgcataaatcccaactcattaaccggtagcccaacataattgcttcgtacacccc 301  Q
    |||||| ||||||||| || | ||||||||||||| |||||||||||||||| ||||||||    
T  24472983 gcaccctgcataaatctcagcccattaaccggtagtccaacataattgcttcctacacccc 24473043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 241 - 303
Target Start/End: Original strand, 45409508 - 45409570
Alignment:
Q  241 gcaccccgcataaatcccaactcattaaccggtagcccaacataattgcttcgtacaccccaa 303  Q
    |||||| ||||||||||||   ||||||| |||||| ||||||||||||||| ||||||||||    
T  45409508 gcaccctgcataaatcccagtccattaactggtagcgcaacataattgcttcctacaccccaa 45409570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 281 - 324
Target Start/End: Complemental strand, 17232885 - 17232842
Alignment:
Q  281 cataattgcttcgtacaccccaacccattttgtcatacatcccc 324  Q
    |||||||||||| |||||| ||||||||||||||||||| ||||    
T  17232885 cataattgcttcctacacctcaacccattttgtcatacaccccc 17232842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 281 - 324
Target Start/End: Original strand, 40004754 - 40004797
Alignment:
Q  281 cataattgcttcgtacaccccaacccattttgtcatacatcccc 324  Q
    |||||||||||| |||||||||| ||||||||||||||| ||||    
T  40004754 cataattgcttcttacaccccaatccattttgtcatacaccccc 40004797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 281 - 324
Target Start/End: Complemental strand, 42434570 - 42434527
Alignment:
Q  281 cataattgcttcgtacaccccaacccattttgtcatacatcccc 324  Q
    |||||||||||| |||||| ||||||||||||||||||| ||||    
T  42434570 cataattgcttcatacacctcaacccattttgtcatacaccccc 42434527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 237 - 301
Target Start/End: Original strand, 202936 - 203000
Alignment:
Q  237 ttatgcaccccgcataaatcccaactcattaaccggtagcccaacataattgcttcgtacacccc 301  Q
    |||||||||  ||| ||||||||   |||||||||||||||||||||||||||||| ||||||||    
T  202936 ttatgcaccgtgcacaaatcccagtccattaaccggtagcccaacataattgcttcctacacccc 203000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0221 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0221
Description:

Target: scaffold0221; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 281 - 324
Target Start/End: Original strand, 20520 - 20563
Alignment:
Q  281 cataattgcttcgtacaccccaacccattttgtcatacatcccc 324  Q
    |||||||||||| |||||||||||||||||||||||||| ||||    
T  20520 cataattgcttcctacaccccaacccattttgtcatacaccccc 20563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1251 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: scaffold1251
Description:

Target: scaffold1251; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 281 - 326
Target Start/End: Original strand, 438 - 483
Alignment:
Q  281 cataattgcttcgtacaccccaacccattttgtcatacatccccaa 326  Q
    ||||||| |||| |||||||||||||||||||||||||| ||||||    
T  438 cataattacttcatacaccccaacccattttgtcatacacccccaa 483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0455 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: scaffold0455
Description:

Target: scaffold0455; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 281 - 324
Target Start/End: Complemental strand, 10693 - 10650
Alignment:
Q  281 cataattgcttcgtacaccccaacccattttgtcatacatcccc 324  Q
    |||||||||||| |||||| ||||||||||||||||||| ||||    
T  10693 cataattgcttcctacacctcaacccattttgtcatacaccccc 10650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0050 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0050
Description:

Target: scaffold0050; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 281 - 319
Target Start/End: Original strand, 21013 - 21051
Alignment:
Q  281 cataattgcttcgtacaccccaacccattttgtcataca 319  Q
    |||||||||||| |||||||||| |||||||||||||||    
T  21013 cataattgcttcctacaccccaaaccattttgtcataca 21051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0194 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0194
Description:

Target: scaffold0194; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 233 - 301
Target Start/End: Complemental strand, 28699 - 28631
Alignment:
Q  233 atccttatgcaccccgcataaatcccaactcattaaccggtagcccaacataattgcttcgtacacccc 301  Q
    |||||| ||||||  || ||||||||| | |||| |  |||||||||||||||||||||| ||||||||    
T  28699 atccttttgcaccgtgcttaaatcccagcccattgattggtagcccaacataattgcttcctacacccc 28631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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