View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9703_low_28 (Length: 351)
Name: NF9703_low_28
Description: NF9703
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9703_low_28 |
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Alignment Details
Target: chr5 (Bit Score: 163; Significance: 5e-87; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 163; E-Value: 5e-87
Query Start/End: Original strand, 11 - 220
Target Start/End: Original strand, 5771738 - 5771946
Alignment:
| Q |
11 |
cataggttatgtttgtttttgttttgtccaatgaggcataagcatactaaaaaatctattttgattggtatattctcnnnnnnnctatagcttgttggaa |
110 |
Q |
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| T |
5771738 |
cataggttatgtttgtttttgttttgtccaatgaggcataagcatactaaaaaatctattttgattggtatattctctttttttctatagcttgttggaa |
5771837 |
T |
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| Q |
111 |
ggtttgacatgttacgacaatctaagacnnnnnnngctacctcatattattgtaagtgatgtccaaaatctagtagtgcttgtgtggattaaaaatttaa |
210 |
Q |
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| T |
5771838 |
ggtttgacatgttacgacaatctaagac-aacaaagctacctcatattattgtaagtgatgtccaaaatctagtagtgcttgtgtggattaaaaatttaa |
5771936 |
T |
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| Q |
211 |
ttcatgattt |
220 |
Q |
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|||||||||| |
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| T |
5771937 |
ttcatgattt |
5771946 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 89; E-Value: 8e-43
Query Start/End: Original strand, 248 - 336
Target Start/End: Original strand, 5771945 - 5772033
Alignment:
| Q |
248 |
ttctgcatttacaagaacgagattgagactgtattttcatttaatacttattatggtttctatattgttttgaattaagctcaagtttt |
336 |
Q |
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| T |
5771945 |
ttctgcatttacaagaacgagattgagactgtattttcatttaatacttattatggtttctatattgttttgaattaagctcaagtttt |
5772033 |
T |
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