View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9703_low_30 (Length: 338)
Name: NF9703_low_30
Description: NF9703
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9703_low_30 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 264; Significance: 1e-147; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 18 - 305
Target Start/End: Complemental strand, 4665518 - 4665231
Alignment:
| Q |
18 |
tttattagaattagatattagtcttggttgattgtgttcagtctaagactgagaagaccttagattgagtttgtttcgtagtttcaaaatttattctctt |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4665518 |
tttattagaattagatattagtcttggttgattgtgtttggtcgaagactgagaagaccttagattgagtttgtttcgtagtttcaaaatttattctctt |
4665419 |
T |
|
| Q |
118 |
ggattacattctctaggaatattattcccaccaaagtgtttggtaaaatcttgatattcctaggaaagttggcaaggtgtgttttatttttcagaataat |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
4665418 |
ggattacattctctaggaatattattcccaccaaagtgtttggtaaaatcttgatattcctaggaaagttggtaaggtgtgttttatttttcagaataaa |
4665319 |
T |
|
| Q |
218 |
taattttcgaaaacaattaatttttataaacttgtacggaatatgataatattatatttctaacctcatttttctagaactgtctgtg |
305 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
4665318 |
taattttcgaaaacaattaatttttataaacttgtacggaatatgataatattatatttctaacctcatttttctagaaatgtctgtg |
4665231 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 136 - 186
Target Start/End: Original strand, 41054350 - 41054400
Alignment:
| Q |
136 |
atattattcccaccaaagtgtttggtaaaatcttgatattcctaggaaagt |
186 |
Q |
| |
|
||||||||| || ||||||||||||||| ||||||| ||||||||||||| |
|
|
| T |
41054350 |
atattattctcataaaagtgtttggtaaattcttgatgttcctaggaaagt |
41054400 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University