View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9703_low_31 (Length: 334)
Name: NF9703_low_31
Description: NF9703
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9703_low_31 |
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Alignment Details
Target: chr2 (Bit Score: 290; Significance: 1e-163; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 290; E-Value: 1e-163
Query Start/End: Original strand, 15 - 316
Target Start/End: Original strand, 13944114 - 13944415
Alignment:
| Q |
15 |
acatcagctataaatttgaaaaaggaagacacacaatgcacacaagaaaaagtgaataatgacaacgagcactgatatatctcataacactcccaaaatt |
114 |
Q |
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| T |
13944114 |
acatcagctataaatttgaaaaaggaagacacacaatgcacaaaagaaaaagtgaataatgacaacgagcactgatatatctcataacactcccaaaatt |
13944213 |
T |
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| Q |
115 |
atagtgccttcatctctagcaggctgataacagataactccttacttgcttatgaagctttccattttcttaaaaataatactaataaaagaaaaggagt |
214 |
Q |
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| T |
13944214 |
atagtgccttcatctctagcaggctgataacagataactccttacttgcttatgaagctttccattttcttaaaaataatactaataaaagaaaaggagt |
13944313 |
T |
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| Q |
215 |
tgttggcattaagctaaacatggaaaaggcttattataggatagaatggggttttcttgagcaaactcttgttattatgggtttcctgtcgaagatgatt |
314 |
Q |
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| T |
13944314 |
tgttggcattaagctaaacatggaaaaggcttattataggatagaatggggttttcttgagcaaaatcttgttactatgggtttcctgtcgaagatgatt |
13944413 |
T |
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| Q |
315 |
ag |
316 |
Q |
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|| |
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| T |
13944414 |
ag |
13944415 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 290; E-Value: 1e-163
Query Start/End: Original strand, 15 - 316
Target Start/End: Original strand, 14085303 - 14085604
Alignment:
| Q |
15 |
acatcagctataaatttgaaaaaggaagacacacaatgcacacaagaaaaagtgaataatgacaacgagcactgatatatctcataacactcccaaaatt |
114 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14085303 |
acatcagctataaatttgaaaaaggaagacacacaatgcacaaaagaaaaagtgaataatgacaacgagcactgatatatctcataacactcccaaaatt |
14085402 |
T |
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| Q |
115 |
atagtgccttcatctctagcaggctgataacagataactccttacttgcttatgaagctttccattttcttaaaaataatactaataaaagaaaaggagt |
214 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14085403 |
atagtgccttcatctctagcaggctgataacagataactccttacttgcttatgaagctttccattttcttaaaaataatactaataaaagaaaaggagt |
14085502 |
T |
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| Q |
215 |
tgttggcattaagctaaacatggaaaaggcttattataggatagaatggggttttcttgagcaaactcttgttattatgggtttcctgtcgaagatgatt |
314 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||| |
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| T |
14085503 |
tgttggcattaagctaaacatggaaaaggcttattataggatagaatggggttttcttgagcaaaatcttgttactatgggtttcctgtcgaagatgatt |
14085602 |
T |
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| Q |
315 |
ag |
316 |
Q |
| |
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|| |
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| T |
14085603 |
ag |
14085604 |
T |
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