View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9703_low_32 (Length: 332)
Name: NF9703_low_32
Description: NF9703
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9703_low_32 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 286; Significance: 1e-160; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 1 - 321
Target Start/End: Original strand, 7012584 - 7012902
Alignment:
| Q |
1 |
ttcatcacttctgtcattggccttggctttccaagtttctcataatactaccacacaaaaaatacaaattttctaagatgtgaaatgccatatagtagtg |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7012584 |
ttcatcacttctgtcattggccttggctttccaagtttctcataatactaccaca--aaaaatacaaattttctaagatgtgaaatgccatatagtagtg |
7012681 |
T |
|
| Q |
101 |
gaaaataaagtgaaattagctgtgagaatatgaattgattaattacattgacaatgtctgtccatctttgtgatgaataatctgctctatatagagaatt |
200 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
7012682 |
gaaaataaattgaaattagctgtgagaatatgaattgattaattacattgacaatgtctgtccatctttgtgatgaataatctgctctatacagagaatt |
7012781 |
T |
|
| Q |
201 |
gagacctccagccaagatgtgaggagggtcattggaacggataattgcatttacttgcttcattctccaattctcatctaaatgatctagttgagttgag |
300 |
Q |
| |
|
||||||||| || ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
7012782 |
gagacctcctgctaagatgtgaggagggtcattggaacggattattgcatttacttgcttcattctccaattttcatctaaatgatctagttgagttgag |
7012881 |
T |
|
| Q |
301 |
tgcaaatttatttcccctgcc |
321 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
7012882 |
tgcaaatttatttcccctgcc |
7012902 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University