View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9703_low_41 (Length: 282)
Name: NF9703_low_41
Description: NF9703
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9703_low_41 |
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| [»] scaffold0171 (3 HSPs) |
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| [»] scaffold0181 (1 HSPs) |
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Alignment Details
Target: scaffold0171 (Bit Score: 222; Significance: 1e-122; HSPs: 3)
Name: scaffold0171
Description:
Target: scaffold0171; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 57 - 282
Target Start/End: Complemental strand, 11160 - 10935
Alignment:
| Q |
57 |
atatggaagttaggaaaattgcttacaacgatgaaactcgtgacattctccttgtttaacttgatcccaatctcagtgttattgttctcatgaatttcca |
156 |
Q |
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| T |
11160 |
atatggaagttaggagaattgcttacaacgatgaaactcgtgacattctccttgtttaacttgatcccaatctcagtgttattgttctcatgaatttcca |
11061 |
T |
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| Q |
157 |
acaaaatatcaagaagatccctaacatgagaaccttcactgttttcctttattttcttcctttccttttgacggtcccttatcgccatctccatcattgt |
256 |
Q |
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| T |
11060 |
acaaaatatcaagaagatccctaacatgagaaccttcactgttttcctttattttcttcctttccttttgacggtcccttatcgccatctccatcattgt |
10961 |
T |
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| Q |
257 |
ttccatccttttctgcatccctttaa |
282 |
Q |
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| T |
10960 |
ttccatccttttctgcatccctttaa |
10935 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0171; HSP #2
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 144 - 238
Target Start/End: Complemental strand, 24623 - 24529
Alignment:
| Q |
144 |
tcatgaatttccaacaaaatatcaagaagatccctaacatgagaaccttcactgttttcctttattttcttcctttccttttgacggtcccttat |
238 |
Q |
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| T |
24623 |
tcatgaatttccaacaaaatatcaagcaaatccttaacatgagcaccttcgccattttcctttcttttcttcatttcctcttgatgctcccttat |
24529 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0171; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 141 - 252
Target Start/End: Complemental strand, 19217 - 19106
Alignment:
| Q |
141 |
ttctcatgaatttccaacaaaatatcaagaagatccctaacatgagaaccttcactgttttcctttattttcttcctttccttttgacggtcccttatcg |
240 |
Q |
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| T |
19217 |
ttctcatgcatttctaacaaaatatcaagtagatccctaacatgatcaccttcacccttttctttccttttcttcatttccacttgatgctcccttatca |
19118 |
T |
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| Q |
241 |
ccatctccatca |
252 |
Q |
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| T |
19117 |
ccctctccatca |
19106 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 150 - 256
Target Start/End: Original strand, 38808606 - 38808714
Alignment:
| Q |
150 |
atttccaac-aaaatatcaagaagatccctaacatgagaaccttcactgttttcctttatt-ttcttcctttccttttgacggtcccttatcgccatctc |
247 |
Q |
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| T |
38808606 |
atttccaaccaaaatatcaagcagatccctaacacaagcaccttcaccactttccttccttattcctcctttcctcttgatgctcccttatcaccctctc |
38808705 |
T |
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| Q |
248 |
catcattgt |
256 |
Q |
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| T |
38808706 |
catcattgt |
38808714 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0181 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0181
Description:
Target: scaffold0181; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 151 - 213
Target Start/End: Original strand, 11106 - 11168
Alignment:
| Q |
151 |
tttccaacaaaatatcaagaagatccctaacatgagaaccttcactgttttcctttattttct |
213 |
Q |
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||||||||||||||||||| | ||||||| |||||| |||||||| ||| ||||| |||||| |
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| T |
11106 |
tttccaacaaaatatcaagtatatccctatcatgagcaccttcaccctttacctttcttttct |
11168 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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