View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9703_low_44 (Length: 265)

Name: NF9703_low_44
Description: NF9703
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9703_low_44
NF9703_low_44
[»] chr4 (6 HSPs)
chr4 (5-265)||(24718531-24718791)
chr4 (222-264)||(1017111-1017153)
chr4 (122-178)||(24727035-24727093)
chr4 (232-264)||(18628498-18628530)
chr4 (220-264)||(22471355-22471399)
chr4 (220-264)||(39178211-39178255)
[»] chr5 (1 HSPs)
chr5 (220-257)||(7907963-7908000)
[»] chr2 (3 HSPs)
chr2 (221-262)||(34927045-34927086)
chr2 (220-256)||(5902502-5902538)
chr2 (220-264)||(29430839-29430883)
[»] chr8 (1 HSPs)
chr8 (220-264)||(2487953-2487997)
[»] chr7 (1 HSPs)
chr7 (220-256)||(48131418-48131454)


Alignment Details
Target: chr4 (Bit Score: 253; Significance: 1e-141; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 253; E-Value: 1e-141
Query Start/End: Original strand, 5 - 265
Target Start/End: Original strand, 24718531 - 24718791
Alignment:
Q  5 atggacatcagcctttttctatttttgttgagcaaagcggcaatgacgcgggaagcaatggtaagtcatgcatgagttaacaaagaaacattcctttcaa 104  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24718531 atggacatcagcctttttctatttttgttgagcaaagcggcaatgacgcgggaagcaatggtaagtcatgcatgagttaacaaagaaacattcctttcaa 24718630  T
Q  105 tacgtaactcatgcatgccaacatgcatgctttgttttctactacctatatataaatattcttcttcaaatgtcattgttttatatgatcttcctttcaa 204  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  24718631 tacgtaactcatgcatgccaacatgcatgctttgttttctactacctatatataaatattcttcttcaaatgtcattattttatatgatcttcctttcaa 24718730  T
Q  205 taacttaagaacatgtcataagttcgtccaaacagtctcataagtgtttatgtcagtagag 265  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  24718731 taacttaagaacatgtcataagttcgaccaaacagtctcataagtgtttatgtcagtagag 24718791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 222 - 264
Target Start/End: Original strand, 1017111 - 1017153
Alignment:
Q  222 ataagttcgtccaaacagtctcataagtgtttatgtcagtaga 264  Q
    |||||||| |||||||||||||| |||||||||||||||||||    
T  1017111 ataagttcttccaaacagtctcacaagtgtttatgtcagtaga 1017153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 122 - 178
Target Start/End: Original strand, 24727035 - 24727093
Alignment:
Q  122 ccaacatgcatgctttgttttctactacctatatat--aaatattcttcttcaaatgtc 178  Q
    |||||||||||||||||||||||||| | |||||||  | ||||||||||||| |||||    
T  24727035 ccaacatgcatgctttgttttctacttcttatatatacatatattcttcttcacatgtc 24727093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 232 - 264
Target Start/End: Complemental strand, 18628530 - 18628498
Alignment:
Q  232 ccaaacagtctcataagtgtttatgtcagtaga 264  Q
    ||||||||||||| |||||||||||||||||||    
T  18628530 ccaaacagtctcacaagtgtttatgtcagtaga 18628498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 220 - 264
Target Start/End: Original strand, 22471355 - 22471399
Alignment:
Q  220 tcataagttcgtccaaacagtctcataagtgtttatgtcagtaga 264  Q
    ||||||||||  ||||||||||||| ||||| |||||||||||||    
T  22471355 tcataagttctcccaaacagtctcacaagtgcttatgtcagtaga 22471399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 220 - 264
Target Start/End: Complemental strand, 39178255 - 39178211
Alignment:
Q  220 tcataagttcgtccaaacagtctcataagtgtttatgtcagtaga 264  Q
    ||||||||||  ||||||||| ||| |||||||||||||||||||    
T  39178255 tcataagttctcccaaacagtgtcaaaagtgtttatgtcagtaga 39178211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 220 - 257
Target Start/End: Original strand, 7907963 - 7908000
Alignment:
Q  220 tcataagttcgtccaaacagtctcataagtgtttatgt 257  Q
    |||||||||| |||||||||||||||||||||||||||    
T  7907963 tcataagttcttccaaacagtctcataagtgtttatgt 7908000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 30; Significance: 0.00000009; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 221 - 262
Target Start/End: Original strand, 34927045 - 34927086
Alignment:
Q  221 cataagttcgtccaaacagtctcataagtgtttatgtcagta 262  Q
    ||||||||| |||||||||||| ||||||| |||||||||||    
T  34927045 cataagttcttccaaacagtcttataagtgcttatgtcagta 34927086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 220 - 256
Target Start/End: Complemental strand, 5902538 - 5902502
Alignment:
Q  220 tcataagttcgtccaaacagtctcataagtgtttatg 256  Q
    |||||||||| |||||||||||||| |||||||||||    
T  5902538 tcataagttcttccaaacagtctcacaagtgtttatg 5902502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 220 - 264
Target Start/End: Original strand, 29430839 - 29430883
Alignment:
Q  220 tcataagttcgtccaaacagtctcataagtgtttatgtcagtaga 264  Q
    |||||||||| |||||| |||| || |||||||||||||||||||    
T  29430839 tcataagttcttccaaatagtcccacaagtgtttatgtcagtaga 29430883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 220 - 264
Target Start/End: Complemental strand, 2487997 - 2487953
Alignment:
Q  220 tcataagttcgtccaaacagtctcataagtgtttatgtcagtaga 264  Q
    ||||||||||  ||||||||||||| ||||| |||||||||||||    
T  2487997 tcataagttctcccaaacagtctcacaagtgcttatgtcagtaga 2487953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 220 - 256
Target Start/End: Original strand, 48131418 - 48131454
Alignment:
Q  220 tcataagttcgtccaaacagtctcataagtgtttatg 256  Q
    |||||||||| |||||||||||||||||||| |||||    
T  48131418 tcataagttcttccaaacagtctcataagtgcttatg 48131454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University