View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9703_low_46 (Length: 257)
Name: NF9703_low_46
Description: NF9703
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9703_low_46 |
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| [»] chr6 (3 HSPs) |
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| [»] scaffold0531 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 223; Significance: 1e-123; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 19 - 257
Target Start/End: Complemental strand, 7971790 - 7971552
Alignment:
| Q |
19 |
gtacaggtcggctcggacattgtctacatggtcaccggaggtgcatcattgcaaaaatttcacaatacagtgtgtccaagttgcaaaccaatcaaattga |
118 |
Q |
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||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
7971790 |
gtacaggtcgggtcggacattgtctacatggtcaccggaggtgcatcattgcaaaaatttcacaatacagtctgtccaagttgcaaaccaatcaaattga |
7971691 |
T |
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| Q |
119 |
gctttttcattatgatctttgcctctgctcactttgtattgtctcatctaccaaacttgaactccatttccggtgtatctttggtggcagccgttatgtc |
218 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
7971690 |
gctttttcattatgatctttgcctctgctcattttgtattgtctcatctaccaaacttgaactccatttccggtgtatctttggtggcagccgtcatgtc |
7971591 |
T |
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| Q |
219 |
catgaggtatatcgacatctttttattctctatattact |
257 |
Q |
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||||||||||||||||||||||||||||||||||||||| |
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| T |
7971590 |
catgaggtatatcgacatctttttattctctatattact |
7971552 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 19 - 257
Target Start/End: Original strand, 8041898 - 8042136
Alignment:
| Q |
19 |
gtacaggtcggctcggacattgtctacatggtcaccggaggtgcatcattgcaaaaatttcacaatacagtgtgtccaagttgcaaaccaatcaaattga |
118 |
Q |
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||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
8041898 |
gtacaggtcgggtcggacattgtctacatggtcaccggaggtgcatcattgcaaaaatttcacaatacagtctgtccaagttgcaaaccaatcaaattga |
8041997 |
T |
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| Q |
119 |
gctttttcattatgatctttgcctctgctcactttgtattgtctcatctaccaaacttgaactccatttccggtgtatctttggtggcagccgttatgtc |
218 |
Q |
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| T |
8041998 |
gctttttcattatgatctttgcctctgctcattttgtattgtctcatctaccaaacttgaactccatttccggtgtatctttggtggcagccgtcatgtc |
8042097 |
T |
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| Q |
219 |
catgaggtatatcgacatctttttattctctatattact |
257 |
Q |
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||||||||||||||||||||||||||||||||||||||| |
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| T |
8042098 |
catgaggtatatcgacatctttttattctctatattact |
8042136 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 34 - 257
Target Start/End: Original strand, 8032034 - 8032257
Alignment:
| Q |
34 |
gacattgtctacatggtcaccggaggtgcatcattgcaaaaatttcacaatacagtgtgtccaagttgcaaaccaatcaaattgagctttttcattatga |
133 |
Q |
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||||||||||||||||||||||||||||||||||||| || || ||||||||||||||| ||||||||||| |||||||||| || ||||||||||| |
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| T |
8032034 |
gacattgtctacatggtcaccggaggtgcatcattgcggaagttccacaatacagtgtgttcaagttgcaaaaatatcaaattgacctatttcattatga |
8032133 |
T |
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| Q |
134 |
tctttgcctctgctcactttgtattgtctcatctaccaaacttgaactccatttccggtgtatctttggtggcagccgttatgtccatgaggtatatcga |
233 |
Q |
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|||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||| ||||| ||||| || |||||||| |||||||||| |
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| T |
8032134 |
tctttgcctctgctcaatttgtattgtgtcatctaccaaacttgaactccatttccggtgtatccttggttgcagcagtcatgtccatttggtatatcga |
8032233 |
T |
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| Q |
234 |
catctttttattctctatattact |
257 |
Q |
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||||||| |||||||||||||||| |
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| T |
8032234 |
catctttctattctctatattact |
8032257 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 139; Significance: 8e-73; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 139; E-Value: 8e-73
Query Start/End: Original strand, 33 - 219
Target Start/End: Complemental strand, 41382175 - 41381989
Alignment:
| Q |
33 |
ggacattgtctacatggtcaccggaggtgcatcattgcaaaaatttcacaatacagtgtgtccaagttgcaaaccaatcaaattgagctttttcattatg |
132 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
41382175 |
ggacattgtctacatggtcaccggaggtgcatcattgcaaaaatttcacaatacagtttgtccaagttgcaaaccaatcaaattgagctttttcattatg |
41382076 |
T |
|
| Q |
133 |
atctttgcctctgctcactttgtattgtctcatctaccaaacttgaactccatttccggtgtatctttggtggcagccgttatgtcc |
219 |
Q |
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||||||||||||||||| |||||||||| ||||||||| ||| | |||||| |||| |||||||||| || ||||| ||||||||| |
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| T |
41382075 |
atctttgcctctgctcaatttgtattgtgtcatctacccaacctcaactccctttctagtgtatcttttgttgcagcagttatgtcc |
41381989 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0531 (Bit Score: 127; Significance: 1e-65; HSPs: 1)
Name: scaffold0531
Description:
Target: scaffold0531; HSP #1
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 35 - 257
Target Start/End: Complemental strand, 3297 - 3075
Alignment:
| Q |
35 |
acattgtctacatggtcaccggaggtgcatcattgcaaaaatttcacaatacagtgtgtccaagttgcaaaccaatcaaattgagctttttcattatgat |
134 |
Q |
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||||||| |||||||||||||||||||||||| ||| ||| || ||||||||||||||||||||||||||| |||||||||| | |||||||||||| |
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| T |
3297 |
acattgtttacatggtcaccggaggtgcatcactgcgaaagttccacaatacagtgtgtccaagttgcaaaaatatcaaattgacatatttcattatgat |
3198 |
T |
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| Q |
135 |
ctttgcctctgctcactttgtattgtctcatctaccaaacttgaactccatttccggtgtatctttggtggcagccgttatgtccatgaggtatatcgac |
234 |
Q |
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||||||||||||||| |||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||| || |||||||| |||||||| || |
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| T |
3197 |
ctttgcctctgctcaatttgtattgtgtcatctaccaaacttgaactccatttctggtgtatctttggtggcagcagtcatgtccatttggtatatctac |
3098 |
T |
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| Q |
235 |
atctttttattctctatattact |
257 |
Q |
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||| | | ||||||||| |||| |
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| T |
3097 |
ttctatctgttctctatagtact |
3075 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 35 - 200
Target Start/End: Complemental strand, 14198739 - 14198574
Alignment:
| Q |
35 |
acattgtctacatggtcaccggaggtgcatcattgcaaaaatttcacaatacagtgtgtccaagttgcaaaccaatcaaattgagctttttcattatgat |
134 |
Q |
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|||||||||||||||| |||||||| ||| ||||| || ||||| |||| |||||| | ||||||| ||||||||||| | ||| || ||||| |
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| T |
14198739 |
acattgtctacatggtaaccggaggaaaatctttgcagaagtttcatgataccgtgtgttccgattgcaaaaaaatcaaattgacttattttataatgat |
14198640 |
T |
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| Q |
135 |
ctttgcctctgctcactttgtattgtctcatctaccaaacttgaactccatttccggtgtatcttt |
200 |
Q |
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|||||||||| ||||||||| |||||||| || || ||||||||||| ||||| ||||| ||||| |
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| T |
14198639 |
ttttgcctctgttcactttgtcttgtctcacctccctaacttgaactctatttctggtgtctcttt |
14198574 |
T |
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