View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9703_low_47 (Length: 251)
Name: NF9703_low_47
Description: NF9703
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9703_low_47 |
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Alignment Details
Target: chr5 (Bit Score: 234; Significance: 1e-129; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 1 - 246
Target Start/End: Original strand, 12003222 - 12003467
Alignment:
| Q |
1 |
ttatatcatcattactatcatgtttgctgcagtcttcactatcccgggtggactcaatcaaaatactgggtcacctatcttcttgcattacaaaatattt |
100 |
Q |
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| T |
12003222 |
ttatatcatcattactatcatgtttgctgcagtcttcactatcccaggtggactcaatcaaaatactgggtcacctaccttcttgcattacaaaatattt |
12003321 |
T |
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| Q |
101 |
aatatttttctcttagcagatgcattatctatcattgcttctgcctcatcactcttagttttcattgggattcacacatcaaattacactgcaaaagatt |
200 |
Q |
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| T |
12003322 |
aatatttttctcttagcagatgcattatctatcattgcttctgcctcatcactcttagttttcattgggattcacacatcaaattacactgcaaaagatt |
12003421 |
T |
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| Q |
201 |
ttctcaaagtcttgccgataaagttgatggttggccctatgcttct |
246 |
Q |
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| T |
12003422 |
ttctcaaagtcttgccgataaagttgatggttggccttatgcttct |
12003467 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 12 - 225
Target Start/End: Complemental strand, 12090874 - 12090664
Alignment:
| Q |
12 |
ttactatcatgtttgctgcagtcttcactatcccgggtggactcaatcaaaatactgggtcacctatcttcttgcattacaaaatatttaatatttttct |
111 |
Q |
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| T |
12090874 |
ttactatcatgtttgctgcagccttcactattctgggtggaaacaaccaa---actgggacacccatctccttggatcaaaatacatttaaaatgtttct |
12090778 |
T |
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| Q |
112 |
cttagcagatgcattatctatcattgcttctgcctcatcactcttagttttcattgggattcacacatcaaattacactgcaaaagattttctcaaagtc |
211 |
Q |
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| T |
12090777 |
cttagctgattcggtatctatcatcacttctgccacttcagtcttgtttttcatttcgattctcacatcgcgttgccatgcaatagatttcctcaaggtc |
12090678 |
T |
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| Q |
212 |
ttgccgataaagtt |
225 |
Q |
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| T |
12090677 |
ttgcctatgaagtt |
12090664 |
T |
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