View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9703_low_48 (Length: 250)
Name: NF9703_low_48
Description: NF9703
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9703_low_48 |
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Alignment Details
Target: chr8 (Bit Score: 202; Significance: 1e-110; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 4 - 237
Target Start/End: Original strand, 2366119 - 2366351
Alignment:
| Q |
4 |
ggataccaaatgattttaaaggaggtttagggttcaaaccgtgaaaactaacgtaaccactaaattactaaatttgtctatcgaaaaacatgcagtatcc |
103 |
Q |
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| T |
2366119 |
ggataccaaatgattttaaaggaggtttagggttcaaaccgtgaaaactaacgtaatcactaagttactaaatttgtctatcgaaaaacatgcagtatcc |
2366218 |
T |
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| Q |
104 |
agaccctcatttcaagaaaaaacattataaaagaagaggtctgcagaagcctttggttggcgctattgtcgataatttatctccaggaggacaggtatat |
203 |
Q |
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| T |
2366219 |
agaccctcatttcaagaaaaaacatcataaaagaagaggtctgcagaagcctttggttggtgctattgtcgataatttatctccagggggacatgtatat |
2366318 |
T |
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| Q |
204 |
tttctgcatgctctaatataagttcactactcct |
237 |
Q |
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| T |
2366319 |
tttctgcatgctctaatataagtt-actactcct |
2366351 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 92 - 223
Target Start/End: Original strand, 2362040 - 2362171
Alignment:
| Q |
92 |
catgcagtatccagaccctcatttcaagaaaaaacattataaaagaagaggtctgcagaagcctttggttggcgctattgtcgataatttatctccagga |
191 |
Q |
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| T |
2362040 |
catgcagtgtccagaccctcatttaaagaaaaaatatcataaaagaagagttttgcaaaagcctttggttggcactattgtagataatttatctccaggg |
2362139 |
T |
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| Q |
192 |
ggacaggtatattttctgcatgctctaatata |
223 |
Q |
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| T |
2362140 |
ggacaggtatattttctgcatgctctaatata |
2362171 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 93 - 215
Target Start/End: Original strand, 2354058 - 2354180
Alignment:
| Q |
93 |
atgcagtatccagaccctcatttcaagaaaaaacattataaaagaagaggtctgcagaagcctttggttggcgctattgtcgataatttatctccaggag |
192 |
Q |
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| T |
2354058 |
atgcagtgtccagaccctcatttcaagaaaaaacatcataagagaagggttttgcagaagcctttggttggtgctattgtagataatttatctcctgggg |
2354157 |
T |
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| Q |
193 |
gacaggtatattttctgcatgct |
215 |
Q |
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| T |
2354158 |
gacaggtatattttctgtatgct |
2354180 |
T |
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