View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9703_low_49 (Length: 250)
Name: NF9703_low_49
Description: NF9703
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9703_low_49 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 173; Significance: 4e-93; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 1 - 208
Target Start/End: Complemental strand, 33370470 - 33370260
Alignment:
| Q |
1 |
ttgaatctcacaataaaagaaggtaaaacaaggtaatttgatttgttatgggagttgaagaaattgaatgtgtgggaaatttggagtgatgatgagtttg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33370470 |
ttgaatctcacaataaaagaaggtaaaataaggtaatttgatttgttatgggagttgaagaaattgaatgtgtgggaaatttggagtgatgatgagtttg |
33370371 |
T |
|
| Q |
101 |
aaaggattttgaggaatatgttttatgtgatgtgatgatgaatgttgttgtt---tcttgcctgaaaattatctgcattcttctctctcattatttttcg |
197 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||| || || ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33370370 |
aaaggattttgaggaatatgctttatgtgatgtgatgatgaatgttgttgttgtttcatgattgaaaattatctgcattcttctctctcattatttttca |
33370271 |
T |
|
| Q |
198 |
ttttccagatt |
208 |
Q |
| |
|
||||||||||| |
|
|
| T |
33370270 |
ttttccagatt |
33370260 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 169; Significance: 1e-90; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 1 - 208
Target Start/End: Complemental strand, 32548266 - 32548056
Alignment:
| Q |
1 |
ttgaatctcacaataaaagaaggtaaaacaaggtaatttgatttgttatgggagttgaagaaattgaatgtgtgggaaatttggagtgatgatgagtttg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32548266 |
ttgaatctcacaataaaagaaggtaaaacaaggtaatttgatttgttatgggagttgaagaaattgaatgtgtgggaaatttggagtgatgatgagtttg |
32548167 |
T |
|
| Q |
101 |
aaaggattttgaggaatatgttttatgtgatgtgatgatgaatgttgt---tgtttcttgcctgaaaattatctgcattcttctctctcattatttttcg |
197 |
Q |
| |
|
|||||||||||||||||||| |||||||| |||||||||| ||||||| ||||||||| |||||||||||||||||||||||||| |||||||||| |
|
|
| T |
32548166 |
aaaggattttgaggaatatgctttatgtggtgtgatgatgtatgttgttgttgtttcttgattgaaaattatctgcattcttctctctaattatttttca |
32548067 |
T |
|
| Q |
198 |
ttttccagatt |
208 |
Q |
| |
|
||||||||||| |
|
|
| T |
32548066 |
ttttccagatt |
32548056 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 74
Target Start/End: Original strand, 35770744 - 35770817
Alignment:
| Q |
1 |
ttgaatctcacaataaaagaaggtaaaacaaggtaatttgatttgttatgggagttgaagaaattgaatgtgtg |
74 |
Q |
| |
|
||||||||||| |||| ||||||||||| |||||||||||||||||||||||| || || |||||| ||||||| |
|
|
| T |
35770744 |
ttgaatctcacgataatagaaggtaaaataaggtaatttgatttgttatgggaattaaataaattggatgtgtg |
35770817 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 43 - 91
Target Start/End: Original strand, 46251917 - 46251965
Alignment:
| Q |
43 |
ttgttatgggagttgaagaaattgaatgtgtgggaaatttggagtgatg |
91 |
Q |
| |
|
||||||||||| ||||||| |||||| ||||| |||| ||||||||||| |
|
|
| T |
46251917 |
ttgttatgggaattgaagatattgaaggtgtgagaaaattggagtgatg |
46251965 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 162; Significance: 1e-86; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 1 - 208
Target Start/End: Complemental strand, 32944079 - 32943868
Alignment:
| Q |
1 |
ttgaatctcacaataaaagaaggtaaaacaaggtaatttgatttgttatgggagttgaagaaattgaatgtgtgggaaatttggagtgatgatgagtttg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
32944079 |
ttgaatctcacaataaaagaaggtaaaataaggtaatttgatttgttatgggagttgaagaaattgaatgggtgggaaatttggagtgatgatgagtttg |
32943980 |
T |
|
| Q |
101 |
aaaggatttt-gaggaatatgttttatgtgatgtgatgatgaatgttgttgtt---tcttgcctgaaaattatctgcattcttctctctcattatttttc |
196 |
Q |
| |
|
|||||||||| |||||||||| ||||||||||||||||||||||||||||||| || || ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32943979 |
aaaggatttttgaggaatatgctttatgtgatgtgatgatgaatgttgttgttgtttcatgattgaaaattatctgcattcttctctctcattatttttc |
32943880 |
T |
|
| Q |
197 |
gttttccagatt |
208 |
Q |
| |
|
||||||||||| |
|
|
| T |
32943879 |
attttccagatt |
32943868 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 46; Significance: 2e-17; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 49288245 - 49288180
Alignment:
| Q |
1 |
ttgaatctcacaataaaagaaggtaaaacaaggtaatttgatttgttatgggagttgaagaaattg |
66 |
Q |
| |
|
||||||||||| |||| ||||||||||| |||||||||||||||||||||||| ||||| |||||| |
|
|
| T |
49288245 |
ttgaatctcacgataatagaaggtaaaataaggtaatttgatttgttatgggaattgaataaattg |
49288180 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 96 - 153
Target Start/End: Complemental strand, 49085949 - 49085897
Alignment:
| Q |
96 |
gtttgaaaggattttgaggaatatgttttatgtgatgtgatgatgaatgttgttgttt |
153 |
Q |
| |
|
||||||||||||||||||||||| | ||||||| |||||||||||||||||||| |
|
|
| T |
49085949 |
gtttgaaaggattttgaggaataagctttatgt-----gatgatgaatgttgttgttt |
49085897 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 37; Significance: 0.000000000006; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 43 - 91
Target Start/End: Complemental strand, 26893806 - 26893758
Alignment:
| Q |
43 |
ttgttatgggagttgaagaaattgaatgtgtgggaaatttggagtgatg |
91 |
Q |
| |
|
||||||||||| ||||||||||||||||||| |||||||||||||||| |
|
|
| T |
26893806 |
ttgttatgggaattgaagaaattgaatgtgtaagaaatttggagtgatg |
26893758 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 43 - 91
Target Start/End: Complemental strand, 26899245 - 26899197
Alignment:
| Q |
43 |
ttgttatgggagttgaagaaattgaatgtgtgggaaatttggagtgatg |
91 |
Q |
| |
|
||||||||||| ||||||||||||||||||| |||||||||||||||| |
|
|
| T |
26899245 |
ttgttatgggaattgaagaaattgaatgtgtaagaaatttggagtgatg |
26899197 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 43 - 91
Target Start/End: Complemental strand, 6852238 - 6852190
Alignment:
| Q |
43 |
ttgttatgggagttgaagaaattgaatgtgtgggaaatttggagtgatg |
91 |
Q |
| |
|
||||||||||| ||||||||||||||||||| ||||||||||| |||| |
|
|
| T |
6852238 |
ttgttatgggaattgaagaaattgaatgtgtaagaaatttggagcgatg |
6852190 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University