View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9703_low_5 (Length: 529)

Name: NF9703_low_5
Description: NF9703
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9703_low_5
NF9703_low_5
[»] chr3 (24 HSPs)
chr3 (13-297)||(4170915-4171199)
chr3 (323-511)||(4171223-4171411)
chr3 (63-291)||(50518721-50518947)
chr3 (44-294)||(25647888-25648135)
chr3 (13-290)||(37123551-37123818)
chr3 (172-291)||(14893260-14893379)
chr3 (61-252)||(14194152-14194340)
chr3 (62-291)||(33143584-33143813)
chr3 (176-291)||(32010121-32010236)
chr3 (148-290)||(48892986-48893128)
chr3 (148-284)||(14280188-14280323)
chr3 (147-294)||(41039462-41039609)
chr3 (176-291)||(46358014-46358129)
chr3 (173-294)||(28937357-28937472)
chr3 (175-289)||(25594142-25594256)
chr3 (175-293)||(823027-823144)
chr3 (176-291)||(37998841-37998956)
chr3 (181-260)||(1652539-1652617)
chr3 (181-270)||(7105183-7105275)
chr3 (190-260)||(47946049-47946118)
chr3 (196-260)||(14754946-14755010)
chr3 (110-162)||(46358167-46358219)
chr3 (182-260)||(30935040-30935117)
chr3 (63-133)||(28937502-28937574)
[»] chr2 (28 HSPs)
chr2 (13-294)||(7696133-7696413)
chr2 (31-260)||(13337449-13337668)
chr2 (87-266)||(4974990-4975169)
chr2 (87-266)||(4992898-4993077)
chr2 (186-294)||(33788255-33788362)
chr2 (84-284)||(34230445-34230642)
chr2 (176-279)||(10173223-10173326)
chr2 (173-291)||(41086436-41086554)
chr2 (14-294)||(12342992-12343257)
chr2 (110-260)||(37770316-37770461)
chr2 (185-296)||(22884741-22884852)
chr2 (186-291)||(42802427-42802535)
chr2 (173-291)||(33533376-33533500)
chr2 (175-260)||(41113403-41113488)
chr2 (162-291)||(29997265-29997394)
chr2 (182-294)||(25504518-25504629)
chr2 (173-284)||(29139591-29139700)
chr2 (175-294)||(4472276-4472395)
chr2 (206-284)||(10772889-10772967)
chr2 (196-291)||(15361078-15361172)
chr2 (188-291)||(29487447-29487548)
chr2 (181-291)||(1269791-1269900)
chr2 (185-266)||(27740331-27740412)
chr2 (214-275)||(31115185-31115246)
chr2 (218-270)||(37559832-37559884)
chr2 (176-291)||(20572407-20572521)
chr2 (195-230)||(40360652-40360687)
chr2 (182-235)||(44594018-44594071)
[»] chr5 (26 HSPs)
chr5 (64-294)||(8297694-8297922)
chr5 (63-291)||(26405180-26405406)
chr5 (173-294)||(25992332-25992453)
chr5 (13-290)||(26045596-26045874)
chr5 (110-294)||(7194930-7195113)
chr5 (60-267)||(7682770-7682978)
chr5 (175-266)||(13953903-13953996)
chr5 (110-295)||(30097601-30097786)
chr5 (82-291)||(10174921-10175128)
chr5 (85-294)||(33109831-33110035)
chr5 (13-291)||(14302076-14302355)
chr5 (176-284)||(5187276-5187384)
chr5 (182-294)||(8731278-8731389)
chr5 (171-294)||(33258518-33258641)
chr5 (190-276)||(27713421-27713507)
chr5 (182-270)||(31742504-31742592)
chr5 (156-260)||(7391660-7391766)
chr5 (218-269)||(21391932-21391983)
chr5 (188-266)||(23426646-23426724)
chr5 (175-260)||(4941305-4941390)
chr5 (184-266)||(24071918-24072000)
chr5 (148-213)||(37108105-37108170)
chr5 (221-257)||(24401099-24401135)
chr5 (175-270)||(25657773-25657867)
chr5 (175-245)||(4914177-4914247)
chr5 (195-224)||(34345831-34345860)
[»] chr4 (26 HSPs)
chr4 (13-294)||(38636863-38637143)
chr4 (12-291)||(41117600-41117878)
chr4 (180-297)||(42719494-42719611)
chr4 (13-280)||(16832663-16832931)
chr4 (206-294)||(9262807-9262895)
chr4 (13-161)||(49528243-49528390)
chr4 (175-266)||(28967208-28967299)
chr4 (13-293)||(19814847-19815130)
chr4 (60-270)||(22810826-22811023)
chr4 (181-267)||(48098645-48098731)
chr4 (196-294)||(52009179-52009277)
chr4 (175-291)||(2061464-2061580)
chr4 (173-292)||(25754206-25754325)
chr4 (99-291)||(49747785-49747977)
chr4 (13-168)||(25753343-25753499)
chr4 (186-284)||(35947946-35948044)
chr4 (188-292)||(20632128-20632233)
chr4 (183-256)||(46487621-46487694)
chr4 (13-120)||(19673271-19673377)
chr4 (182-230)||(43077307-43077355)
chr4 (196-294)||(21983504-21983601)
chr4 (175-233)||(39420726-39420784)
chr4 (192-269)||(16502053-16502123)
chr4 (174-254)||(38930120-38930200)
chr4 (186-294)||(12296518-12296625)
chr4 (186-230)||(35336914-35336958)
[»] chr7 (22 HSPs)
chr7 (147-290)||(42532892-42533035)
chr7 (13-265)||(24324456-24324707)
chr7 (61-290)||(33719183-33719413)
chr7 (196-291)||(6726051-6726146)
chr7 (128-260)||(16828763-16828894)
chr7 (60-291)||(1321011-1321241)
chr7 (187-294)||(28534134-28534240)
chr7 (180-291)||(44755906-44756016)
chr7 (176-294)||(3478683-3478800)
chr7 (175-291)||(6716368-6716484)
chr7 (181-284)||(8745469-8745571)
chr7 (196-290)||(48058306-48058399)
chr7 (148-260)||(16954795-16954906)
chr7 (181-293)||(36674809-36674921)
chr7 (196-291)||(47456706-47456800)
chr7 (158-243)||(39013558-39013643)
chr7 (197-234)||(22567781-22567818)
chr7 (13-77)||(8745324-8745388)
chr7 (185-232)||(13312180-13312227)
chr7 (175-291)||(25438690-25438807)
chr7 (200-276)||(9427725-9427801)
chr7 (182-266)||(38485906-38485989)
[»] scaffold0050 (1 HSPs)
scaffold0050 (60-284)||(36926-37149)
[»] chr1 (30 HSPs)
chr1 (148-294)||(27102489-27102634)
chr1 (173-291)||(9312972-9313090)
chr1 (99-267)||(34775129-34775297)
chr1 (103-292)||(46768437-46768627)
chr1 (25-291)||(11439652-11439919)
chr1 (62-291)||(31290653-31290880)
chr1 (173-294)||(4431006-4431127)
chr1 (60-294)||(32882583-32882815)
chr1 (23-279)||(10785105-10785359)
chr1 (180-294)||(376436-376549)
chr1 (148-279)||(52278589-52278717)
chr1 (217-294)||(7451890-7451967)
chr1 (176-291)||(9557241-9557357)
chr1 (176-284)||(27905766-27905873)
chr1 (185-265)||(37200485-37200565)
chr1 (182-244)||(32863225-32863287)
chr1 (187-276)||(17033939-17034028)
chr1 (184-267)||(41126107-41126190)
chr1 (176-260)||(38544379-38544463)
chr1 (186-270)||(46603705-46603789)
chr1 (175-294)||(49820488-49820608)
chr1 (182-294)||(50588906-50589014)
chr1 (160-221)||(16149093-16149155)
chr1 (182-294)||(19598990-19599101)
chr1 (196-267)||(26602479-26602550)
chr1 (184-231)||(42374526-42374573)
chr1 (175-265)||(38546841-38546931)
chr1 (64-142)||(16577480-16577560)
chr1 (182-214)||(4652128-4652160)
chr1 (184-232)||(18844971-18845019)
[»] chr8 (10 HSPs)
chr8 (84-294)||(17656365-17656575)
chr8 (13-242)||(10248246-10248477)
chr8 (176-290)||(12197708-12197822)
chr8 (176-290)||(12442136-12442250)
chr8 (202-294)||(8843743-8843833)
chr8 (175-291)||(8862256-8862370)
chr8 (196-291)||(25184754-25184848)
chr8 (175-214)||(2273760-2273799)
chr8 (185-235)||(9831691-9831741)
chr8 (198-266)||(43312312-43312378)
[»] chr6 (9 HSPs)
chr6 (176-291)||(20701430-20701544)
chr6 (173-291)||(3880244-3880362)
chr6 (110-290)||(15120235-15120415)
chr6 (148-293)||(6860338-6860484)
chr6 (184-292)||(17278093-17278201)
chr6 (198-269)||(13423718-13423789)
chr6 (190-230)||(26534424-26534464)
chr6 (13-113)||(3880405-3880508)
chr6 (182-290)||(9224273-9224380)
[»] scaffold0063 (1 HSPs)
scaffold0063 (13-270)||(58298-58556)
[»] scaffold0119 (1 HSPs)
scaffold0119 (181-291)||(41802-41911)
[»] scaffold1613 (1 HSPs)
scaffold1613 (176-260)||(658-742)
[»] scaffold1384 (1 HSPs)
scaffold1384 (84-227)||(1347-1494)
[»] scaffold1252 (1 HSPs)
scaffold1252 (197-255)||(816-874)
[»] scaffold0499 (1 HSPs)
scaffold0499 (196-260)||(6906-6970)


Alignment Details
Target: chr3 (Bit Score: 249; Significance: 1e-138; HSPs: 24)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 13 - 297
Target Start/End: Original strand, 4170915 - 4171199
Alignment:
Q  13 tttggtgttcaggactgagagttttactttgaggggtgtttttagaagggggtgagtagtgacgatagatggttggatatcatttatacagtggtcattt 112  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||    
T  4170915 tttggtgttaaggactgagagttttactttgaggggtgtttttagaagggggtgagtagtgacgatggatggttggatatcatttatacaatggtcattt 4171014  T
Q  113 tcgtgaaggagtctattttagatgatgatgcgtattttttgtgggtgttgtcctcaatgatgtttttagggtgtttattttcaggtgttccgcctatata 212  Q
    ||||||||||||||||||||| |||||| |  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4171015 tcgtgaaggagtctattttaggtgatgacgtatattttttgtgggtgttgtcctcaatgatgtttttagggtgtttattttcaggtgttccgcctatata 4171114  T
Q  213 cgacgccttttgtttgtattctcagtttcaccggtctctgttcgtctttagcagggatttggttgtttaatagaatttgctgctt 297  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||    
T  4171115 cgacgccttttgtttgtattctcagtttcaccggtctctgttcgtctttagcagggatttagttgtttaatagaatttgttgctt 4171199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 181; E-Value: 1e-97
Query Start/End: Original strand, 323 - 511
Target Start/End: Original strand, 4171223 - 4171411
Alignment:
Q  323 gacattaaaggacttaaacataaacaattaattatggaccagattaaaaagcaaaagtaagttaaggaatcaaatccttaatttagccgtatagatctga 422  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4171223 gacattaaaggacttaaacataaacaattaattatggaccagattaaaaagcaaaagtaagttaaggaatcaaatccttaatttagccgtatagatctga 4171322  T
Q  423 gtgaccaattcaatctaatctccgtagaaggggcaggccaccaagacctttgtctcgtgcctctaatttgtttacatgtaatactagct 511  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  4171323 gtgaccaattcaatctaatctccgtagaaggggtaggccaccaagacctttgtctagtgcctctaatttgtttacatgtaatactagct 4171411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 63 - 291
Target Start/End: Complemental strand, 50518947 - 50518721
Alignment:
Q  63 ggtgagtagtgacgatagatggttggatatcatttatacagtggtcattttcgtgaaggagtctattttagatgatgatgcgtattttttgtgggtgttg 162  Q
    |||||||||||||||| ||| ||| |||||| ||| |||||||||  | | ||||||||||||| ||||||||| ||| | ||||||| | ||||||| |    
T  50518947 ggtgagtagtgacgatggatcgttagatatcgtttttacagtggtggtat-cgtgaaggagtctgttttagatggtgaggtgtattttgt-tgggtgtgg 50518850  T
Q  163 tcctcaatgatgtttttagggtgtttattttcaggtgttccgcctatatacgacgccttttgtttgtattctcagtttcaccggtctctgttcgtcttta 262  Q
    ||||||  | |||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||| |    
T  50518849 tcctcatgggtgtttttagggtgtttattttcgggtgttccgcctatatacgacaccttttgtttgtattctcagtttcaccagtctctgttcgtcttga 50518750  T
Q  263 gcagggatttggttgtttaatagaatttg 291  Q
    ||||||||    |||||||||| ||||||    
T  50518749 gcagggatcaaattgtttaataaaatttg 50518721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 44 - 294
Target Start/End: Original strand, 25647888 - 25648135
Alignment:
Q  44 aggggtgtttttagaagggggtgagtagtgacgatagatggttggatatcatttatacagtggtcattttcgtgaaggagtctattttagatgatgatgc 143  Q
    |||||||||||||   ||||||||||||||| ||| |||||||||||||| ||| | |||||||  ||| ||||| ||||| | |||||  || |||       
T  25647888 aggggtgtttttatttgggggtgagtagtgatgatggatggttggatatcgttttt-cagtggtggttt-cgtgatggagtatgttttatgtggtgacat 25647985  T
Q  144 gtattttttgtgggtgttgtcctcaatgatgtttttagggtgtttattttcaggtgttccgcctatatacgacgccttttgtttgtattctcagtttcac 243  Q
    || | ||| |||||||| |||||||    |||||||||||||||||||||| ||||||||| ||||||||  ||||||||||||||||||| ||||||||    
T  25647986 gt-tatttggtgggtgtggtcctcatgtgtgtttttagggtgtttattttcgggtgttccgtctatatactgcgccttttgtttgtattcttagtttcac 25648084  T
Q  244 cggtctctgttcgtctttagcagggatttggttgtttaatagaatttgctg 294  Q
    || |||||||||||||| | |||||||| |||||||||||  |||||||||    
T  25648085 cgatctctgttcgtcttgaacagggattaggttgtttaattaaatttgctg 25648135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 13 - 290
Target Start/End: Original strand, 37123551 - 37123818
Alignment:
Q  13 tttggtgttcaggactgagagttttactttgaggggtgtttttagaagggggtgagtagtgacgatagatggt--tggatatcatttatacagtggtcat 110  Q
    |||| ||||| ||||||||||||| | || ||||||||||  |    || ||||||||||||| | || ||||  |||||||| ||| |||||||||| |    
T  37123551 tttgatgttctggactgagagtttaatttggaggggtgttcatctttggcggtgagtagtgacaacaggtggtgttggatatcgtttttacagtggtcgt 37123650  T
Q  111 tttcgtgaaggagtctattttagatgatgatgcgtattttttgtgggtgttgtcctcaatgatgtttttagggtgtttattttcaggtgttccgcctata 210  Q
    |||||||||| ||||||||||| ||| ||||| |||||||  |||||||||||| ||||           |||||||||||||| ||||||||| ||||     
T  37123651 tttcgtgaagaagtctattttatatggtgatgtgtattttg-gtgggtgttgtcttcaa-----------gggtgtttattttcgggtgttccgactatg 37123738  T
Q  211 tacgacgccttttgtttgtattctcagtttcaccggtctctgttcgtctttagcagggatttggttgtttaatagaattt 290  Q
    || ||||||||||||||||||||||||||||| ||||||| ||||||||| ||||| |||||  |||||||||| |||||    
T  37123739 taggacgccttttgtttgtattctcagtttcatcggtctcagttcgtcttgagcagagatttaattgtttaataaaattt 37123818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 76; E-Value: 7e-35
Query Start/End: Original strand, 172 - 291
Target Start/End: Original strand, 14893260 - 14893379
Alignment:
Q  172 atgtttttagggtgtttattttcaggtgttccgcctatatacgacgccttttgtttgtattctcagtttcaccggtctctgttcgtctttagcagggatt 271  Q
    ||||||||||||||||||||||||||||||||||||||||||| || |||||||||||| |||| |||||||| |||||||||| |||| |||||  ||     
T  14893260 atgtttttagggtgtttattttcaggtgttccgcctatatacggcgtcttttgtttgtactctcggtttcaccagtctctgttcatcttgagcagttatc 14893359  T
Q  272 tggttgtttaatagaatttg 291  Q
    ||||||||||||| ||||||    
T  14893360 tggttgtttaataaaatttg 14893379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 61 - 252
Target Start/End: Original strand, 14194152 - 14194340
Alignment:
Q  61 ggggtgagtagtgacgatagatggttggatatcatttatacagtggtcattttcgtgaaggagtctattttagatgatgatgcgtattttttgtgggtgt 160  Q
    |||||||||||||||||| |||||||||||||| || || ||||||  |||| ||||| ||||||| |||||| || ||| | |||||||  ||||||||    
T  14194152 ggggtgagtagtgacgatggatggttggatatcgtt-attcagtggcgattt-cgtgatggagtctgttttaggtggtgacgtgtattttg-gtgggtgt 14194248  T
Q  161 tgtcctcaatga-tgtttttagggtgtttattttcaggtgttccgcctatatacgacgccttttgtttgtattctcagtttcaccggtctctg 252  Q
     ||||||| ||| |||||||||| ||||||||||| | ||||||||||||||| | | |||||||||||| ||||||||||||| ||||||||    
T  14194249 ggtcctca-tgagtgtttttaggatgtttattttcggatgttccgcctatataaggcaccttttgtttgtgttctcagtttcactggtctctg 14194340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 62 - 291
Target Start/End: Complemental strand, 33143813 - 33143584
Alignment:
Q  62 gggtgagtagtgacgatagatgg--ttggatatcatttatacagtggtcattttcgtgaaggagtctattttagatgatgatgcgtattttttgtgggtg 159  Q
    ||||||||||||||||  |||||  ||||||||| ||| | |||||||  ||||||||||||||| | |||||| || ||| | || ||| | |||| ||    
T  33143813 gggtgagtagtgacgacggatggggttggatatcgtttgttcagtggtggttttcgtgaaggagtttgttttaggtggtgacgtgt-tttatggtggatg 33143715  T
Q  160 ttgtcctcaatgatgtttttagggtgtttattttcaggtgttccgcctatatacgacgccttttgtttgtattctcagtttcaccggtctctgttcgtct 259  Q
    || |||||   |  |||||| |||||||| ||||| ||||||||||||||||| ||||||||||| |||||||||||||||||||| | | |||||| ||    
T  33143714 ttatcctcttgggagttttttgggtgttt-ttttcgggtgttccgcctatatatgacgccttttggttgtattctcagtttcaccgatttatgttcgcct 33143616  T
Q  260 ttagcagggatttggttgtttaatagaatttg 291  Q
    | ||||| ||| ||||||||||||| ||||||    
T  33143615 tgagcagagatctggttgtttaataaaatttg 33143584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 176 - 291
Target Start/End: Original strand, 32010121 - 32010236
Alignment:
Q  176 ttttagggtgtttattttcaggtgttccgcctatatacgacgccttttgtttgtattctcagtttcaccggtctctgttcgtctttagcagggatttggt 275  Q
    ||||| ||||||||||||||||| ||||||||||||||||||| ||| | |||||||||| |  |||||| |||||||||||||| || |||||| ||||    
T  32010121 ttttaaggtgtttattttcaggtattccgcctatatacgacgcttttaggttgtattctctgaatcaccgatctctgttcgtcttgagtagggatctggt 32010220  T
Q  276 tgtttaatagaatttg 291  Q
    |||| |||| ||||||    
T  32010221 tgttaaataaaatttg 32010236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 148 - 290
Target Start/End: Complemental strand, 48893128 - 48892986
Alignment:
Q  148 tttttgtgggtgttgtcctcaatgatgtttttagggtgtttattttcaggtgttccgcctatatacgacgccttttgtttgtattctcagtttcaccggt 247  Q
    |||| |||||||||||| |||  | ||||||||  |||||||||||| | |||||| | |||||||| |  | |||||||||||||||||||||| | ||    
T  48893128 ttttggtgggtgttgtcttcaggggtgtttttaaagtgtttattttcggatgttcctcttatatacggcatcgtttgtttgtattctcagtttcatctgt 48893029  T
Q  248 ctctgttcgtctttagcagggatttggttgtttaatagaattt 290  Q
    || |||||||||| ||||||||| | ||||||||||| |||||    
T  48893028 ctttgttcgtcttgagcagggatctagttgtttaataaaattt 48892986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 148 - 284
Target Start/End: Complemental strand, 14280323 - 14280188
Alignment:
Q  148 tttttgtgggtgttgtcctcaatgatgtttttagggtgtttattttcaggtgttccgcctatatacgacgccttttgtttgtattctcagtttcaccggt 247  Q
    |||| ||||||||||||||||  ||| |||| || ||||||| |||| ||||||||||||||||||| |||||||  |||||||| ||||||||| || |    
T  14280323 ttttagtgggtgttgtcctcag-gatattttcagagtgtttactttcgggtgttccgcctatatacggcgcctttaatttgtattatcagtttcatcgat 14280225  T
Q  248 ctctgttcgtctttagcagggatttggttgtttaata 284  Q
    || |||||||||| ||||  ||| || ||||||||||    
T  14280224 ctttgttcgtcttgagcaaagatctgattgtttaata 14280188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 147 - 294
Target Start/End: Original strand, 41039462 - 41039609
Alignment:
Q  147 ttttttgtgggtgttgtcctcaatgatgtttttagggtgtttattttcaggtgttccgcctatatacgacgccttttgtttgtattctcagtttcaccgg 246  Q
    ||||| |||||||||||| |||  | |||||||||||||||||||||| ||||||||||||||||| || || |||| ||||||| ||  ||||||| |     
T  41039462 tttttggtgggtgttgtcttcacgggtgtttttagggtgtttattttctggtgttccgcctatatatgatgcattttctttgtatgcttggtttcactga 41039561  T
Q  247 tctctgttcgtctttagcagggatttggttgtttaatagaatttgctg 294  Q
    ||||| ||||| || || |||||| |  |||||| ||| |||||||||    
T  41039562 tctctattcgttttaagtagggatctatttgtttcataaaatttgctg 41039609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 176 - 291
Target Start/End: Complemental strand, 46358129 - 46358014
Alignment:
Q  176 ttttagggtgtttattttcaggtgttccgcctatatacgacgccttttgtttgtattctcagtttcaccggtctctgttcgtctttagcagggatttggt 275  Q
    ||||| |||||||||||||||||||| |||||||||||  || |||| ||||||||| || |  || | |||||||||||||||| ||||||||| ||||    
T  46358129 ttttaaggtgtttattttcaggtgtttcgcctatatacagcgtctttagtttgtattttctgaatctctggtctctgttcgtcttgagcagggatctggt 46358030  T
Q  276 tgtttaatagaatttg 291  Q
    |||| |||| ||||||    
T  46358029 tgttaaataaaatttg 46358014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 173 - 294
Target Start/End: Complemental strand, 28937472 - 28937357
Alignment:
Q  173 tgtttttagggtgtttattttcaggtgttccgcctatatacgacgccttttgtttgtattctcagtttcaccggtctctgttcgtctttagcagggattt 272  Q
    |||||||||||||||||||||| |||||||||| |||||||| |||      |||||||||||| |||||||||||||| |||||||| | ||| ||| |    
T  28937472 tgtttttagggtgtttattttcgggtgttccgcttatatacggcgc------tttgtattctcaatttcaccggtctctcttcgtcttgaacagagatct 28937379  T
Q  273 ggttgtttaatagaatttgctg 294  Q
    |||| |||||||  ||||||||    
T  28937378 ggttatttaataatatttgctg 28937357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 175 - 289
Target Start/End: Complemental strand, 25594256 - 25594142
Alignment:
Q  175 tttttagggtgtttattttcaggtgttccgcctatatacgacgccttttgtttgtattctcagtttcaccggtctctgttcgtctttagcagggatttgg 274  Q
    |||||| |||||||| |||| ||||||||||||||||||||||| |||| ||| ||||||| |  |||||| |||||||| ||||| ||||| ||| |||    
T  25594256 tttttatggtgtttactttcgggtgttccgcctatatacgacgcattttatttttattctctgaatcaccgatctctgtttgtcttgagcagtgatctgg 25594157  T
Q  275 ttgtttaatagaatt 289  Q
    || || |||| ||||    
T  25594156 tttttaaataaaatt 25594142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 175 - 293
Target Start/End: Complemental strand, 823144 - 823027
Alignment:
Q  175 tttttagggtgtttattttcaggtgttccgcctatatacgacgccttttgtttgtattctcagtttcaccggtctctgttcgtctttagcagggatttgg 274  Q
    |||||| |||||||| |||  |||||||| | ||||||||||||||||   ||||| |||| |  ||||||||||||||||||||| ||||| ||| |||    
T  823144 tttttatggtgtttaatttg-ggtgttccccttatatacgacgcctttaacttgtagtctctgaatcaccggtctctgttcgtcttgagcagcgatctgg 823046  T
Q  275 ttgtttaatagaatttgct 293  Q
    || ||||||| ||||||||    
T  823045 ttttttaataaaatttgct 823027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 176 - 291
Target Start/End: Complemental strand, 37998956 - 37998841
Alignment:
Q  176 ttttagggtgtttattttcaggtgttccgcctatatacgacgccttttgtttgtattctcagtttcaccggtctctgttcgtctttagcagggatttggt 275  Q
    ||||| ||||||||||||| |   ||||||||||||||| | | |||||||||||||||||||||| | | ||| | |||||||| | ||  ||||| ||    
T  37998956 ttttaaggtgtttattttcggacattccgcctatatacggcacattttgtttgtattctcagtttcgctgatctttattcgtcttgaacaatgatttagt 37998857  T
Q  276 tgtttaatagaatttg 291  Q
    ||||||||| ||||||    
T  37998856 tgtttaataaaatttg 37998841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 181 - 260
Target Start/End: Complemental strand, 1652617 - 1652539
Alignment:
Q  181 gggtgtttattttcaggtgttccgcctatatacgacgccttttgtttgtattctcagtttcaccggtctctgttcgtctt 260  Q
    |||||||||||| | ||||||||||||||||||||||||||| ||||||| | || ||  || ||||||||||| |||||    
T  1652617 gggtgtttattt-cgggtgttccgcctatatacgacgcctttagtttgtactttctgtgacatcggtctctgtttgtctt 1652539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 181 - 270
Target Start/End: Original strand, 7105183 - 7105275
Alignment:
Q  181 gggtgtttattttcaggtgttccgcctatatacgacgccttttgtttgtattctcagtttcac---cggtctctgttcgtctttagcagggat 270  Q
    |||||||||||||  |||||||||||| |||| |  | |||| ||||||| |||| |||||||   ||||||||||||||||| |||||||||    
T  7105183 gggtgtttatttttgggtgttccgcctttataaggtgtctttagtttgtaatctctgtttcaccggcggtctctgttcgtcttgagcagggat 7105275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 190 - 260
Target Start/End: Original strand, 47946049 - 47946118
Alignment:
Q  190 ttttcaggtgttccgcctatatacgacgccttttgtttgtattctcagtttcaccggtctctgttcgtctt 260  Q
    |||||||||||||||||||||||||||||| || |||||||||||  |||| |||  ||||| ||||||||    
T  47946049 ttttcaggtgttccgcctatatacgacgcc-ttcgtttgtattctatgttttaccaatctctattcgtctt 47946118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 196 - 260
Target Start/End: Complemental strand, 14755010 - 14754946
Alignment:
Q  196 ggtgttccgcctatatacgacgccttttgtttgtattctcagtttcaccggtctctgttcgtctt 260  Q
    |||||||||||||| |||| ||||||| ||||||||||||| |||||| | | | ||||||||||    
T  14755010 ggtgttccgcctatgtacggcgcctttagtttgtattctcaatttcactgatatttgttcgtctt 14754946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 110 - 162
Target Start/End: Complemental strand, 46358219 - 46358167
Alignment:
Q  110 ttttcgtgaaggagtctattttagatgatgatgcgtattttttgtgggtgttg 162  Q
    ||||||||||||||||| |||||| ||||||||  |||| |||||||||||||    
T  46358219 ttttcgtgaaggagtctgttttaggtgatgatgtttattctttgtgggtgttg 46358167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 182 - 260
Target Start/End: Complemental strand, 30935117 - 30935040
Alignment:
Q  182 ggtgtttattttcaggtgttccgcctatatacgacgccttttgtttgtattctcagtttcaccggtctctgttcgtctt 260  Q
    ||||||| ||||| |||||| ||| |||||||||| ||||  ||||||||| |||||   |||||||||||||||||||    
T  30935117 ggtgtttgttttcgggtgtttcgcttatatacgacacctta-gtttgtattttcagtaagaccggtctctgttcgtctt 30935040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 63 - 133
Target Start/End: Complemental strand, 28937574 - 28937502
Alignment:
Q  63 ggtgagtagtgacgatagatggt--tggatatcatttatacagtggtcattttcgtgaaggagtctattttag 133  Q
    ||||||||||| |||| | ||||  |||||||| ||| ||||||||||| ||||||||||| |||| ||||||    
T  28937574 ggtgagtagtggcgatgggtggtattggatatcgtttttacagtggtcactttcgtgaaggggtctgttttag 28937502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 130; Significance: 4e-67; HSPs: 28)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 130; E-Value: 4e-67
Query Start/End: Original strand, 13 - 294
Target Start/End: Original strand, 7696133 - 7696413
Alignment:
Q  13 tttggtgttcaggactgagagttttactttgaggggtgtttttagaagggggtgagtagtgacgatagatggttggatatcatttatacagtggtcattt 112  Q
    |||||||||||||||   |||||||| ||| ||||||||||||  ||||| |||||||||||||||   |||||| ||||||||| |||| ||||| |||    
T  7696133 tttggtgttcaggaccaggagttttatttttaggggtgtttttctaagggagtgagtagtgacgatgagtggttgaatatcatttttacattggtcgttt 7696232  T
Q  113 tcgtgaaggagtctattttagatgatgatgcgtattttttgtgggtgttgtcctcaatgatgtttttagggtgtttattttcaggtgttccgcctatata 212  Q
    |||||||||||| |||||||| || ||||| |||||||  |||||||||||||||   | |||||||| ||||||||||||  |||||||||||||||||    
T  7696233 tcgtgaaggagtttattttaggtggtgatgtgtattttg-gtgggtgttgtcctcgggggtgtttttaaggtgtttatttttgggtgttccgcctatata 7696331  T
Q  213 cgacgccttttgtttgtattctcagtttcaccggtctctgttcgtctttagcagggatttggttgtttaatagaatttgctg 294  Q
    ||   ||||||||||||||||||| ||||| |||||||||||| |||| |||||||||||||||||| |||| |||||||||    
T  7696332 cggttccttttgtttgtattctcaatttcatcggtctctgttcatcttgagcagggatttggttgttcaataaaatttgctg 7696413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 91; E-Value: 7e-44
Query Start/End: Original strand, 31 - 260
Target Start/End: Original strand, 13337449 - 13337668
Alignment:
Q  31 gagttttactttgaggggtgtttttagaagggggtgagtagtgacgatagatggttggatatcatttatacagtggtcattttcgtgaaggagtctattt 130  Q
    |||||||| ||||||||||||||||  ||||||||||||||||||||| | || | ||||||| ||| ||| |||||| ||||||||| |||||||        
T  13337449 gagttttattttgaggggtgtttttctaagggggtgagtagtgacgatgggtgat-ggatatcgttt-taccgtggtc-ttttcgtgagggagtct---- 13337541  T
Q  131 tagatgatgatgcgtattttttgtgggtgttgtcctcaatgatgtttttagggtgtttattttcaggtgttccgcctatatacgacgccttttgtttgta 230  Q
      | ||  |||| ||| ||   ||||||||||||||||  | ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  13337542 --ggtggcgatgtgtaattaa-gtgggtgttgtcctcaggggtgtttttagggtgtttattttcaggtgttccacctatatacgacgccttttgtttgta 13337638  T
Q  231 ttctcagtttcaccggtctctgttcgtctt 260  Q
    ||||| ||||||||||||||||||||||||    
T  13337639 ttctctgtttcaccggtctctgttcgtctt 13337668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 87 - 266
Target Start/End: Original strand, 4974990 - 4975169
Alignment:
Q  87 ggatatcatttatacagtggtcattttcgtgaaggagtctattttagatgatgatgcgtattttttgtgggtgttgtcctcaatgatgttttt-agggtg 185  Q
    ||||||| ||| |||||||||| ||||||||||| ||||| |||||| || || || ||| |||  ||||||||| ||||||| ||||||||| ||||||    
T  4974990 ggatatcgtttttacagtggtcgttttcgtgaagaagtctgttttaggtggtggtgtgtaatttg-gtgggtgttatcctcaaggatgtttttcagggtg 4975088  T
Q  186 tttattttcaggtgttccgcctatatacgacgccttttgtttgtattctcagtttcaccggtctctgttcgtctttagcag 266  Q
    ||||||||| ||||||| ||||||||||||||||||| ||||||||||| ||||||||  ||||||||||||||| |||||    
T  4975089 tttattttcgggtgttcagcctatatacgacgcctttagtttgtattcttagtttcactagtctctgttcgtcttgagcag 4975169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 87 - 266
Target Start/End: Original strand, 4992898 - 4993077
Alignment:
Q  87 ggatatcatttatacagtggtcattttcgtgaaggagtctattttagatgatgatgcgtattttttgtgggtgttgtcctcaatgatgttttt-agggtg 185  Q
    ||||||| ||| |||||||||| ||||||||||| ||||| |||||| || || || ||| |||  ||||||||| ||||||| ||||||||| ||||||    
T  4992898 ggatatcgtttttacagtggtcgttttcgtgaagaagtctgttttaggtggtggtgtgtaatttg-gtgggtgttatcctcaaggatgtttttcagggtg 4992996  T
Q  186 tttattttcaggtgttccgcctatatacgacgccttttgtttgtattctcagtttcaccggtctctgttcgtctttagcag 266  Q
    ||||||||| ||||||| ||||||||||||||||||| ||||||||||| ||||||||  ||||||||||||||| |||||    
T  4992997 tttattttcgggtgttcagcctatatacgacgcctttagtttgtattcttagtttcactagtctctgttcgtcttgagcag 4993077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 186 - 294
Target Start/End: Complemental strand, 33788362 - 33788255
Alignment:
Q  186 tttattttcaggtgttccgcctatatacgacgccttttgtttgtattctcagtttcaccggtctctgttcgtctttagcagggatttggttgtttaatag 285  Q
    ||||||||| |||||||||| |||||||| ||||||| |||||||||||| || ||||||||||||||||||||||||||| ||||||||| || ||||     
T  33788362 tttattttcgggtgttccgcatatatacggcgcctttagtttgtattctcggtatcaccggtctctgttcgtctttagcagagatttggtt-ttaaataa 33788264  T
Q  286 aatttgctg 294  Q
    |||||||||    
T  33788263 aatttgctg 33788255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 84 - 284
Target Start/End: Original strand, 34230445 - 34230642
Alignment:
Q  84 gttggatatcatttatacagtggtcattttcgtgaaggagtctattttagatgatgatgcgtattttttgtgggtgttgtcctcaatgatgtttttaggg 183  Q
    |||||||||| ||| || ||||||| |||||||| | |||||| ||| ||||| ||| | |||||||  |||| |||||| || |  | |||||||| |     
T  34230445 gttggatatcgtttttatagtggtcgttttcgtggaagagtctgttt-agatggtgacgtgtattttg-gtggatgttgttctaaggggtgtttttacga 34230542  T
Q  184 tgtttattttcaggtgttccgcctatatacgacgccttttgtttgtattctcagtttcaccggtctctgttcgtctttagcagggatttggttgtttaat 283  Q
    ||||||||||  ||||||||||||||||||| || ||||||||||||||| ||| ||||||| |||||||||||||| ||||| ||| ||||||||||||    
T  34230543 tgtttattttttggtgttccgcctatatacggcgtcttttgtttgtattcgcag-ttcaccgatctctgttcgtcttgagcagagatatggttgtttaat 34230641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 176 - 279
Target Start/End: Complemental strand, 10173326 - 10173223
Alignment:
Q  176 ttttagggtgtttattttcaggtgttccgcctatatacgacgccttttgtttgtattctcagtttcaccggtctctgttcgtctttagcagggatttggt 275  Q
    |||||||||||||||||||||||||||||||||||||| |||| ||| ||||||||| |  ||||||||| |||||||||||||| |||||| || ||||    
T  10173326 ttttagggtgtttattttcaggtgttccgcctatatacaacgcttttagtttgtattatatgtttcaccgatctctgttcgtcttgagcaggaatctggt 10173227  T
Q  276 tgtt 279  Q
    ||||    
T  10173226 tgtt 10173223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 173 - 291
Target Start/End: Complemental strand, 41086554 - 41086436
Alignment:
Q  173 tgtttttagggtgtttattttcaggtgttccgcctatatacgacgccttttgtttgtattctcagtttcaccggtctctgttcgtctttagcagggattt 272  Q
    |||||||||||| ||||||||| |||||| ||||||||||||| || |||| ||||||| ||||||||||| |||||||||||||||| ||||| ||| |    
T  41086554 tgtttttagggtatttattttcgggtgtttcgcctatatacgatgctttttctttgtatgctcagtttcactggtctctgttcgtcttgagcagagatct 41086455  T
Q  273 ggttgtttaatagaatttg 291  Q
     ||||||||| | ||||||    
T  41086454 agttgtttaacaaaatttg 41086436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 14 - 294
Target Start/End: Original strand, 12342992 - 12343257
Alignment:
Q  14 ttggtgttcaggactgagagttttactttgaggggtgtttttagaagggggtgagtagtgacgatagatggttggatatcatttatacagtggtcatttt 113  Q
    |||||||| ||||||| ||||||   |||||||||||||| | |  |||||||||||||||||||   |||||||||||| ||| ||||| |||| ||||    
T  12342992 ttggtgttgaggactgggagtttatttttgaggggtgtttcttg--gggggtgagtagtgacgatgagtggttggatatcgtttttacagaggtcgtttt 12343089  T
Q  114 cgtgaaggagtctattttagatgatgatgcgtattttttgtgggtgttgtcctcaatgatgtttttagggtgtttattttcaggtgttccgcctatatac 213  Q
    ||||||||||||| |||||| || ||| | ||| ||||  ||| ||||||||||            ||||||||||||||| |||||||||||| | ||     
T  12343090 cgtgaaggagtctgttttaggtggtgacgtgta-ttttgatggatgttgtcctc------------agggtgtttattttcgggtgttccgcctttgtaa 12343176  T
Q  214 gacgccttttgtttgtattctcagtttcaccggtctctgttcgtctttagcagggatttggttgtttaatagaatttgctg 294  Q
    |||| |||| ||||||||||||| ||||  ||||||||||| ||||| | | |||   |||||||| |||| |||||||||    
T  12343177 gacgtctttagtttgtattctcaatttcgtcggtctctgtttgtcttgaacggggccatggttgttaaataaaatttgctg 12343257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 110 - 260
Target Start/End: Complemental strand, 37770461 - 37770316
Alignment:
Q  110 ttttcgtgaaggagtctattttagatgatgatgcgtattttttgtgggtgttgtcctcaatgatgtttttagggtgtttattttcaggtgttccgcctat 209  Q
    ||||||||||||||||| |||||| || ||| | | |||||  ||||||| | |||||| || |||||||||||||||||||||| ||||||||||||||    
T  37770461 ttttcgtgaaggagtctgttttaggtggtgacgtggattttg-gtgggtggtatcctca-tggtgtttttagggtgtttattttcgggtgttccgcctat 37770364  T
Q  210 atacgacgccttttgtttgtattctcagtttcaccggtctctgttcgtctt 260  Q
    |||||||||   |||||||||||||||  ||||||| |||||||| |||||    
T  37770363 atacgacgc---ttgtttgtattctcatattcaccgatctctgtttgtctt 37770316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 185 - 296
Target Start/End: Complemental strand, 22884852 - 22884741
Alignment:
Q  185 gtttattttcaggtgttccgcctatatacgacgccttttgtttgtattctcagtttcaccggtctctgttcgtctttagcagggatttggttgtttaata 284  Q
    |||||||||| ||||||||||||||||||||||||||| ||||||||||||  | ||  |||||| |||||||||| ||||| ||||||||| || ||||    
T  22884852 gtttattttcgggtgttccgcctatatacgacgcctttagtttgtattctctatatcgtcggtctttgttcgtcttgagcagagatttggtttttaaata 22884753  T
Q  285 gaatttgctgct 296  Q
     |||||| ||||    
T  22884752 aaatttgatgct 22884741  T

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Target: chr2; HSP #12
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 186 - 291
Target Start/End: Original strand, 42802427 - 42802535
Alignment:
Q  186 tttattttcaggtgttccgcc---tatatacgacgccttttgtttgtattctcagtttcaccggtctctgttcgtctttagcagggatttggttgtttaa 282  Q
    ||||||||  |||||||||||   |||||||||| |||||||||||||||||||||||||| | |||||||||||||| |  ||||||| ||||||||||    
T  42802427 tttatttttgggtgttccgccgtatatatacgacaccttttgtttgtattctcagtttcactgatctctgttcgtcttgaatagggattaggttgtttaa 42802526  T
Q  283 tagaatttg 291  Q
    || ||||||    
T  42802527 taaaatttg 42802535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 173 - 291
Target Start/End: Complemental strand, 33533500 - 33533376
Alignment:
Q  173 tgtttttagggtgtttattttcaggtgttccgc------ctatatacgacgccttttgtttgtattctcagtttcaccggtctctgttcgtctttagcag 266  Q
    ||||||||||||||||||||||| |||||||||      ||||||| | |||||||||||||||| || ||||||||| ||||||||||||||| |||||    
T  33533500 tgtttttagggtgtttattttcaagtgttccgcttccgcctatatatggcgccttttgtttgtatccttagtttcaccagtctctgttcgtcttgagcag 33533401  T
Q  267 ggatttggttgtttaatagaatttg 291  Q
     ||| ||| |||| |||| ||||||    
T  33533400 agatctggctgttaaataaaatttg 33533376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 175 - 260
Target Start/End: Complemental strand, 41113488 - 41113403
Alignment:
Q  175 tttttagggtgtttattttcaggtgttccgcctatatacgacgccttttgtttgtattctcagtttcaccggtctctgttcgtctt 260  Q
    |||||||||| ||||||||| | |||||||||||||||| | | |||| |||||||||||||||||||||||||||| ||||||||    
T  41113488 tttttagggtatttattttcggatgttccgcctatatacaatgtctttagtttgtattctcagtttcaccggtctcttttcgtctt 41113403  T

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Target: chr2; HSP #15
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 162 - 291
Target Start/End: Original strand, 29997265 - 29997394
Alignment:
Q  162 gtcctcaatgatgtttttagggtgtttattttcaggtgttccgcctatatacgacgccttttgtttgtattctcagtttcaccggtctctgttcgtcttt 261  Q
    |||||||  |||| ||||||| ||||||||||| | |||||||| ||||||||  ||||||||||| |||| ||| ||||| ||||||||||||||||||    
T  29997265 gtcctcagggatgattttaggatgtttattttcggatgttccgcttatatacggtgccttttgtttttattttcaatttcatcggtctctgttcgtcttt 29997364  T
Q  262 agcagggatttggttgtttaatagaatttg 291  Q
    | ||| ||   | |||||||||| ||||||    
T  29997365 accagagaccagattgtttaataaaatttg 29997394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 182 - 294
Target Start/End: Complemental strand, 25504629 - 25504518
Alignment:
Q  182 ggtgtttattttcaggtgttccgcctatatacgacgccttttgtttgtattctcagtttcaccggtctctgttcgtctttagcagggatttggttgttta 281  Q
    ||||||||||||  |||||| || ||||||||| |||||||||||||||||||| |  |||||||| |||||| ||||| ||||||||| || || ||||    
T  25504629 ggtgtttatttttgggtgtttcgtctatatacggcgccttttgtttgtattctctgaatcaccggtttctgtttgtcttgagcagggatctgatt-ttta 25504531  T
Q  282 atagaatttgctg 294  Q
    ||| |||||||||    
T  25504530 ataaaatttgctg 25504518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 173 - 284
Target Start/End: Complemental strand, 29139700 - 29139591
Alignment:
Q  173 tgtttttagggtgtttattttcaggtgttccgcctatatacgacgccttttgtttgtattctcagtttcaccggtctctgttcgtctttagcagggattt 272  Q
    |||||||| ||| |||||||||  ||||||| |  |||||||||||||||| ||||||| ||||||||||||||||| |||| |||  |||||| ||| |    
T  29139700 tgtttttaaggtatttattttcgagtgttccactaatatacgacgccttttatttgtatcctcagtttcaccggtctttgtttgtc--tagcagagatct 29139603  T
Q  273 ggttgtttaata 284  Q
    ||||||||||||    
T  29139602 ggttgtttaata 29139591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 175 - 294
Target Start/End: Original strand, 4472276 - 4472395
Alignment:
Q  175 tttttagggtgtttattttcaggtgttccgcctatatacgacgccttttgtttgtattctcagtttcaccggtctctgttcgtctttagcagggatttgg 274  Q
    |||||| ||||||||||||| | ||||||| ||||||||||||||||| |||||||||||| | |||||||  |||||||| |||| | | |||||  |     
T  4472276 tttttatggtgtttattttcggatgttccgtctatatacgacgcctttagtttgtattctctgattcaccgaactctgttcatcttgaacggggatcaga 4472375  T
Q  275 ttgtttaatagaatttgctg 294  Q
    ||||| |||| |||||||||    
T  4472376 ttgttgaataaaatttgctg 4472395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 206 - 284
Target Start/End: Original strand, 10772889 - 10772967
Alignment:
Q  206 ctatatacgacgccttttgtttgtattctcagtttcaccggtctctgttcgtctttagcagggatttggttgtttaata 284  Q
    ||||||||| | | ||||||||||||||| ||||||| ||||||||||||||||| | |||||||| ||||||||||||    
T  10772889 ctatatacgtcactttttgtttgtattcttagtttcatcggtctctgttcgtcttgaacagggattaggttgtttaata 10772967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 196 - 291
Target Start/End: Original strand, 15361078 - 15361172
Alignment:
Q  196 ggtgttccgcctatatacgacgccttttgtttgtattctcagtttcaccggtctctgttcgtctttagcagggatttggttgtttaatagaatttg 291  Q
    |||||| || ||||||||| ||||||| ||||||||| || |||||||| |||||| |||||||| |||||||||||| || ||||||| ||||||    
T  15361078 ggtgtttcgtctatatacggcgcctttcgtttgtattatctgtttcaccagtctctattcgtcttgagcagggatttgatt-tttaataaaatttg 15361172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 188 - 291
Target Start/End: Original strand, 29487447 - 29487548
Alignment:
Q  188 tattttcaggtgttccgcctatatacgacgccttttgtttgtattctcagtttcaccggtctctgttcgtctttagcagggatttggttgtttaatagaa 287  Q
    ||||||||||||||||||||||||||| | ||||| | |||||||||  |  |||||||||||||||| |||| ||||||||| ||||| ||||||| ||    
T  29487447 tattttcaggtgttccgcctatatacggctcctttag-ttgtattctatgaatcaccggtctctgttcatcttgagcagggatctggtt-tttaataaaa 29487544  T
Q  288 tttg 291  Q
    ||||    
T  29487545 tttg 29487548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 181 - 291
Target Start/End: Original strand, 1269791 - 1269900
Alignment:
Q  181 gggtgtttattttcaggtgttccgcctatatacgacgccttttgtttgtattctcagtttcaccggtctctgttcgtctttagcagggatttggttgttt 280  Q
    ||||||||||| |  |||||| ||||| | ||||||||||||  |||||||||||| ||||||||| |||| |||||||| | ||| |||||| |||||     
T  1269791 gggtgtttattcttgggtgtttcgcctttgtacgacgcctttaatttgtattctcaatttcaccggcctct-ttcgtcttgaacagagatttgattgtta 1269889  T
Q  281 aatagaatttg 291  Q
    |||| ||||||    
T  1269890 aataaaatttg 1269900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 185 - 266
Target Start/End: Original strand, 27740331 - 27740412
Alignment:
Q  185 gtttattttcaggtgttccgcctatatacgacgccttttgtttgtattctcagtttcaccggtctctgttcgtctttagcag 266  Q
    |||||||||| |||||||| |||||||||||||||||| ||||||||| || |  ||| || ||| |||||||||| |||||    
T  27740331 gtttattttcgggtgttccacctatatacgacgcctttagtttgtattatctgaatcatcgatctttgttcgtcttgagcag 27740412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 214 - 275
Target Start/End: Complemental strand, 31115246 - 31115185
Alignment:
Q  214 gacgccttttgtttgtattctcagtttcaccggtctctgttcgtctttagcagggatttggt 275  Q
    ||||| |||||| |||||||||||||||||| |||||| |||||||| ||||| ||| ||||    
T  31115246 gacgctttttgtctgtattctcagtttcacccgtctctattcgtcttgagcagtgatctggt 31115185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 218 - 270
Target Start/End: Original strand, 37559832 - 37559884
Alignment:
Q  218 ccttttgtttgtattctcagtttcaccggtctctgttcgtctttagcagggat 270  Q
    ||||| ||||||||||||| |||||||| |||||||||||||| | |||||||    
T  37559832 cctttagtttgtattctcaatttcaccgatctctgttcgtcttaaacagggat 37559884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 176 - 291
Target Start/End: Original strand, 20572407 - 20572521
Alignment:
Q  176 ttttagggtgtttattttcaggtgttccgcctatatacgacgccttttgtttgtattctcagtttcaccggtctctgttcgtctttagcagggatttggt 275  Q
    ||||| |||||||||||| || |||| | |||||||||||| | |||||||| ||||||| |  ||| |||||||||||||| || || || ||| ||||    
T  20572407 ttttatggtgtttattttgag-tgtttcacctatatacgacacattttgtttctattctctgaatcatcggtctctgttcgttttgaggagagatgtggt 20572505  T
Q  276 tgtttaatagaatttg 291  Q
    | || |||| ||||||    
T  20572506 ttttaaataaaatttg 20572521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 195 - 230
Target Start/End: Complemental strand, 40360687 - 40360652
Alignment:
Q  195 aggtgttccgcctatatacgacgccttttgtttgta 230  Q
    ||||||||||||||||||||||| ||||||||||||    
T  40360687 aggtgttccgcctatatacgacgtcttttgtttgta 40360652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 182 - 235
Target Start/End: Original strand, 44594018 - 44594071
Alignment:
Q  182 ggtgtttattttcaggtgttccgcctatatacgacgccttttgtttgtattctc 235  Q
    ||||||||||||| | | ||||  ||||| ||||||||||||||||||||||||    
T  44594018 ggtgtttattttcggatattccatctatacacgacgccttttgtttgtattctc 44594071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 103; Significance: 5e-51; HSPs: 26)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 103; E-Value: 5e-51
Query Start/End: Original strand, 64 - 294
Target Start/End: Original strand, 8297694 - 8297922
Alignment:
Q  64 gtgagtagtgacgatagatggttggatatcatttatacagtggtcattttcgtgaaggagtctattttagatgatgatgcgtattttttgtgggtgttgt 163  Q
    ||||||||||||||||| |||||||| ||| ||| |||| ||||| ||||| ||||||||| | |||||| || ||||| |||||||  |||| |||| |    
T  8297694 gtgagtagtgacgataggtggttggaaatcgtttttacattggtctttttcttgaaggagtgtgttttaggtggtgatgtgtattttg-gtggatgttat 8297792  T
Q  164 cctcaatgatgtttttagggtgtttattttcaggtgttccgcctatatacgacgccttttgtttgtattctcagtttcaccggtctctgttcgtctttag 263  Q
    |||||  | |||||||||||||| |||||||||||||||||||||| ||| ||||||||| |||||||||||||||||||||||||||||||||||| ||    
T  8297793 cctcaggggtgtttttagggtgtgtattttcaggtgttccgcctatgtacaacgcctttt-tttgtattctcagtttcaccggtctctgttcgtcttgag 8297891  T
Q  264 cagggatttggttgtttaatagaatttgctg 294  Q
     || ||| || ||||| |||| |||||||||    
T  8297892 tagagatctgattgttcaataaaatttgctg 8297922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 63 - 291
Target Start/End: Complemental strand, 26405406 - 26405180
Alignment:
Q  63 ggtgagtagtgacgatagatggttggatatcatttatacagtggtcattttcgtgaaggagtctattttagatgatgatgcgtattttttgtgggtgttg 162  Q
    |||||||||||||||| | || ||||||||  |||  |||||| |||||| | ||||| ||||| |||||| || ||| | |||||||  |||| |||||    
T  26405406 ggtgagtagtgacgatgggtgattggatatggttttaacagtg-tcatttccatgaagaagtctgttttaggtggtgacgtgtattttg-gtggttgttg 26405309  T
Q  163 tcctcaatgatgtttttagggtgtttattttcaggtgttccgcctatatacgacgccttttgtttgtattctcagtttcaccggtctctgttcgtcttta 262  Q
    ||||||  | |||||||| ||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||| |    
T  26405308 tcctcaggggtgtttttaaggtgtttattttcgggtgttccgactatatacgacgccttttgtttgtattctcagtttcaccggtctttgttcgtcttga 26405209  T
Q  263 gcagggatttggttgtttaatagaatttg 291  Q
    ||||  || ||||||||||||| ||||||    
T  26405208 gcagaaatctggttgtttaataaaatttg 26405180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 173 - 294
Target Start/End: Original strand, 25992332 - 25992453
Alignment:
Q  173 tgtttttagggtgtttattttcaggtgttccgcctatatacgacgccttttgtttgtattctcagtttcaccggtctctgttcgtctttagcagggattt 272  Q
    ||||||||||||||||||| || |||||||||| |||||||| ||||||||||||||||| ||| ||||||||||||||||||||||| ||||| ||| |    
T  25992332 tgtttttagggtgtttattgtcgggtgttccgcatatatacggcgccttttgtttgtattatcattttcaccggtctctgttcgtcttgagcagagatct 25992431  T
Q  273 ggttgtttaatagaatttgctg 294  Q
    ||||||||||||  ||||||||    
T  25992432 ggttgtttaataatatttgctg 25992453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 13 - 290
Target Start/End: Complemental strand, 26045874 - 26045596
Alignment:
Q  13 tttggtgttcaggactgagagttttactttgaggggtgtttttagaagggggtgagtagtgacgatagatg--gttggatatcatttatacagtggtcat 110  Q
    ||||||||| |||| ||||||||| | ||||||||||||||||     |||||||||||||||||| |  |  ||||||| || ||| ||| ||||||||    
T  26045874 tttggtgtttaggattgagagtttaattttgaggggtgttttt-ctttggggtgagtagtgacgatgggaggtgttggatttcgtttttaccgtggtcat 26045776  T
Q  111 tttcgtgaaggagtctattttagatgatgatgcgtattttttgtgggtgttgtcctcaatgatg-tttttagggtgtttattttcaggtgttccgcctat 209  Q
    |||| ||||| ||||| |||||| || ||| | | | |||| ||||||||||||||||  |  | |||||||||||||||||||  | ||||||| ||||    
T  26045775 tttcatgaagaagtctgttttaggtggtgacgtg-aattttggtgggtgttgtcctcaggggcgttttttagggtgtttatttttggatgttccgtctat 26045677  T
Q  210 atacgacgccttttgtttgtattctcagtttcaccggtctctgttcgtctttagcagggatttggttgtttaatagaattt 290  Q
    ||||| |||||||||||||||| ||||  ||||||||||||||||||| || ||||  ||| | ||||||||||| |||||    
T  26045676 atacggcgccttttgtttgtatgctcaacttcaccggtctctgttcgttttgagcattgatctagttgtttaataaaattt 26045596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 110 - 294
Target Start/End: Complemental strand, 7195113 - 7194930
Alignment:
Q  110 ttttcgtgaaggagtctattttagatgatgatgcgtattttttgtgggtgttgtcctcaatgatgtttttagggtgtttattttcaggtgttccgcctat 209  Q
    |||| |||||||||||| |||||| || ||| | |||||||  ||||||||||||| ||  | |||||||||||||||||||||  | |||||||| |||    
T  7195113 tttttgtgaaggagtctgttttaggtggtgacgtgtattttg-gtgggtgttgtccgcagcggtgtttttagggtgtttatttttggatgttccgcatat 7195015  T
Q  210 atacgacgccttttgtttgtattctcagtttcaccggtctctgttcgtctttagcagggatttggttgtttaatagaatttgctg 294  Q
    | ||||| | |||||| | |||||||||||||| || ||| |||||||||| || |||||| ||||||||||||| |||||||||    
T  7195014 aaacgactcattttgtctatattctcagtttcatcgatctttgttcgtcttgagtagggatctggttgtttaataaaatttgctg 7194930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 60 - 267
Target Start/End: Original strand, 7682770 - 7682978
Alignment:
Q  60 gggggtgagtagtgacgatagatggttggatatca--tttatacagtggtcattttcgtgaaggagtctattttagatgatgatgcgtattttttgtggg 157  Q
    |||| |||||||||||||| ||||||  || || |  ||| ||| |||||| |||| ||||| ||||||||||||| || ||||| |||||||  |||||    
T  7682770 ggggttgagtagtgacgatggatggtgcgagataaagtttttacggtggtcgtttttgtgaaagagtctattttaggtggtgatgtgtattttg-gtggg 7682868  T
Q  158 tgttgtcctcaatgatgtttttagggtgtttattttcaggtgttccgcctatatacgacgccttttgtttgtattctcagtttcaccggtctctgttcgt 257  Q
    |||||| ||||    | ||||| ||||| |||||||| | |||||||||||||||||||||||||  |||||||||||||||||||| ||||   |||||    
T  7682869 tgttgttctcataagtattttttgggtgcttattttcggatgttccgcctatatacgacgcctttaatttgtattctcagtttcacccgtctacattcgt 7682968  T
Q  258 ctttagcagg 267  Q
    ||| ||||||    
T  7682969 cttgagcagg 7682978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 175 - 266
Target Start/End: Complemental strand, 13953996 - 13953903
Alignment:
Q  175 tttttagggtgtttattttcaggtgttccgcctatatacgacgccttttgtttgtattctcagttt--caccggtctctgttcgtctttagcag 266  Q
    |||||| ||||||||||||||||||||||||||||||||| ||||||| ||||||| |||||||||  |||||||||||||||||||| |||||    
T  13953996 tttttaaggtgtttattttcaggtgttccgcctatatacggcgcctttagtttgtactctcagtttcacaccggtctctgttcgtcttgagcag 13953903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 110 - 295
Target Start/End: Original strand, 30097601 - 30097786
Alignment:
Q  110 ttttcgtgaaggagtctattttagatgatgatgcgtattttttgtgggtgttgtcctcaatgatgtttt-tagggtgtttattttcaggtgttccgccta 208  Q
    ||||||||||||||||| |||||| || ||| | |||||||  |||||||||||| |||  |||||||| |||||||||||||||| |||||||||||||    
T  30097601 ttttcgtgaaggagtctgttttaggtggtgacgtgtattttg-gtgggtgttgtcatcatggatgttttttagggtgtttattttcgggtgttccgccta 30097699  T
Q  209 tatacgacgccttttgtttgtattctcagtttcaccggtctctgttcgtctttagcagggatttggttgtttaatagaatttgctgc 295  Q
    |||||| || |||| |||||||||||    || |||||||| |||||||||| |||||  || | ||||||||| | || |||||||    
T  30097700 tatacggcgtctttagtttgtattctttaatttaccggtctttgttcgtcttaagcagaaatctagttgtttaaaaaaaattgctgc 30097786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 82 - 291
Target Start/End: Original strand, 10174921 - 10175128
Alignment:
Q  82 tggttggatatcatttatacagtggtcattttcgtgaaggagtctattttagatgatgatgcgtattttttgtgggtgttgtcctcaatgatgtttttag 181  Q
    |||||||||||| ||| ||| |||||| ||||   |||||||||| |||||| || | | | ||| |||  |||||||||||||||   | |||||||||    
T  10174921 tggttggatatcgtttttaccgtggtcgttttttagaaggagtctgttttaggtggttacgtgtactttg-gtgggtgttgtcctcggaggtgtttttag 10175019  T
Q  182 ggtgtttattttcaggtgttccgcctatatacgacgccttttgtttgtattctcagtttcaccggtctctgttcgtctttagcagggatttggttgttta 281  Q
    | ||||||||| ||||||||  |||||||||||| |||||||||||||||||| | |||||||||||||||||| | || || | |||| |||||| |||    
T  10175020 gatgtttattt-caggtgttttgcctatatacgatgccttttgtttgtattcttaatttcaccggtctctgttcattttgagtaaggatctggttgatta 10175118  T
Q  282 atagaatttg 291  Q
    ||| ||||||    
T  10175119 ataaaatttg 10175128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 85 - 294
Target Start/End: Complemental strand, 33110035 - 33109831
Alignment:
Q  85 ttggatatcatttatacagtggtcattttcgtgaaggagtctattttagatgatgatgcgtattttttgtgggtgttgtcctcaatgatgtttttagggt 184  Q
    ||||||||| ||| |||||||||| |||||||||||| || | |||||| |||||| | |||||||  |||||||||||| |  | | ||||||||  ||    
T  33110035 ttggatatcgtttttacagtggtcgttttcgtgaaggggtttgttttaggtgatgacgtgtattttg-gtgggtgttgtcat--agggtgtttttaaagt 33109939  T
Q  185 gtttattttcaggtgttccgcctatatacgacgccttttgtttgtattctcagtttcaccggtctctgttcgtctttagcagggatttggttgtttaata 284  Q
    |||||||||| |||||| || ||||| |   || ||||||||||||||||||||||||||  | | |||||||||| ||||| |||||| ||||||||||    
T  33109938 gtttattttcgggtgtttcggctatacag--cgtcttttgtttgtattctcagtttcaccaatttatgttcgtcttaagcagagatttgattgtttaata 33109841  T
Q  285 gaatttgctg 294  Q
      ||||||||    
T  33109840 atatttgctg 33109831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 13 - 291
Target Start/End: Complemental strand, 14302355 - 14302076
Alignment:
Q  13 tttggtgttcaggactgagagttttactttgaggggtgtttttagaagggggtgagtagtgacgatagatggt--tggatatcatttatacagtggtcat 110  Q
    |||||||||||||| || |||||| | |||||||||| |||||    |||| ||||||||||||| || ||||  |||||||| ||| |||| ||||| |    
T  14302355 tttggtgttcaggagtgggagtttaattttgaggggtatttttctttggggatgagtagtgacgacaggtggtgttggatatcgtttttacattggtcgt 14302256  T
Q  111 tttcgtgaaggagtctattttagatgatgatgcgtattttttgtgggtgttgtcctcaatgatgtttttagggtgtttattttcaggtgttccgcctata 210  Q
    ||||| |||||| ||| |||||| || ||| | |||||||  |||||||||||| |||  | |||||||||| | ||||||||  ||||||||  |||||    
T  14302255 tttcgcgaaggaatctgttttaggtggtgacgtgtattttg-gtgggtgttgtcatcaggggtgtttttaggatttttatttttgggtgttccttctata 14302157  T
Q  211 tacgacgccttttgtttgtattctcagtttcaccggtctctgttcgtctttagcagggatttggttgtttaatagaatttg 291  Q
    |||| || || |||||| |||| ||| |||||| | | | |||| ||||| | ||||||| ||||| | ||||| ||||||    
T  14302156 tacggcgtctcttgtttatattttcaatttcactgatttttgtttgtcttaaacagggatctggttctctaataaaatttg 14302076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 176 - 284
Target Start/End: Original strand, 5187276 - 5187384
Alignment:
Q  176 ttttagggtgtttattttcaggtgttccgcctatatacgacgccttttgtttgtattctcagtttcaccggtctctgttcgtctttagcagggatttggt 275  Q
    ||||| ||||||||||||| |||| | |  |||||| || ||||||||||||||||||||| |||||||| |||||| || |||| ||||| ||||| ||    
T  5187276 ttttatggtgtttattttcgggtgcttcatctatatgcggcgccttttgtttgtattctcaatttcaccgatctctgctcttcttgagcagagatttagt 5187375  T
Q  276 tgtttaata 284  Q
    |||||||||    
T  5187376 tgtttaata 5187384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 182 - 294
Target Start/End: Original strand, 8731278 - 8731389
Alignment:
Q  182 ggtgtttattttcaggtgttccgcctatatacgacgccttttgtttgtattctcagtttcaccggtctctgttcgtctttagcagggatttggttgttta 281  Q
    ||||||||||||  |||||| || ||||||||| |||||||||||||||||||| |  |||||||| |||||| ||||| ||||||||| || || ||||    
T  8731278 ggtgtttatttttgggtgtttcgtctatatacggcgccttttgtttgtattctctgaatcaccggtttctgtttgtcttgagcagggatctgatt-ttta 8731376  T
Q  282 atagaatttgctg 294  Q
    ||| |||||||||    
T  8731377 ataaaatttgctg 8731389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 171 - 294
Target Start/End: Complemental strand, 33258641 - 33258518
Alignment:
Q  171 gatgtttttagggtgtttattttcaggtgttccgcctatatacgacgccttttgtttgtattctcagtttcaccggtctctgttcgtctttagcagggat 270  Q
    |||||||||| ||||||||||||| |||||| | | |||||||| |||||||| ||||||||  || |||||||||||||||||||| || || ||  ||    
T  33258641 gatgtttttatggtgtttattttcgggtgtttcacatatatacggcgccttttatttgtatttccaatttcaccggtctctgttcgttttgagtagcaat 33258542  T
Q  271 ttggttgtttaatagaatttgctg 294  Q
    || | |||||||||  ||||||||    
T  33258541 ttagctgtttaataatatttgctg 33258518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 190 - 276
Target Start/End: Original strand, 27713421 - 27713507
Alignment:
Q  190 ttttcaggtgttccgcctatatacgacgccttttgtttgtattctcagtttcaccggtctctgttcgtctttagcagggatttggtt 276  Q
    ||||| ||||||||||||||||| | ||||||| |||||||| ||||||||||| |||||| ||||||||| | ||||||| |||||    
T  27713421 ttttcgggtgttccgcctatatatggcgcctttcgtttgtatcctcagtttcactggtctcagttcgtcttgaacagggatctggtt 27713507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 182 - 270
Target Start/End: Original strand, 31742504 - 31742592
Alignment:
Q  182 ggtgtttattttcaggtgttccgcctatatacgacgccttttgtttgta-ttctcagtttcaccggtctctgttcgtctttagcagggat 270  Q
    ||||||| ||||| ||||||||||||||||||| ||||||||||||||| ||||  ||  ||||||||||||||||||||  ||||||||    
T  31742504 ggtgtttgttttcgggtgttccgcctatatacggcgccttttgtttgtacttct-tgtaacaccggtctctgttcgtcttgtgcagggat 31742592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 156 - 260
Target Start/End: Complemental strand, 7391766 - 7391660
Alignment:
Q  156 ggtgttgtcctcaatgatgtttttagggtgtttattttcaggtgttccgcctatatacgacgccttttg--tttgtattctcagtttcaccggtctctgt 253  Q
    |||||||||||||  | |||||||||| ||| || |||||||| ||||||||||||||  | | |||    |||||||||||| ||||||||||||||||    
T  7391766 ggtgttgtcctcatgggtgtttttaggttgtgtactttcaggttttccgcctatatacagcacatttacactttgtattctcattttcaccggtctctgt 7391667  T
Q  254 tcgtctt 260  Q
    |||||||    
T  7391666 tcgtctt 7391660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 218 - 269
Target Start/End: Complemental strand, 21391983 - 21391932
Alignment:
Q  218 ccttttgtttgtattctcagtttcaccggtctctgttcgtctttagcaggga 269  Q
    ||||| |||||||||||||||||||||||||| |||||||||| ||||||||    
T  21391983 cctttagtttgtattctcagtttcaccggtctttgttcgtcttgagcaggga 21391932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 188 - 266
Target Start/End: Original strand, 23426646 - 23426724
Alignment:
Q  188 tattttcaggtgttccgcctatatacgacgccttttgtttgtattctcagtttcaccggtctctgttcgtctttagcag 266  Q
    ||||||| ||||||||||||||||||| | ||||||  |||||||||| |  |||||||||||||||| |||| |||||    
T  23426646 tattttcgggtgttccgcctatatacggcaccttttagttgtattctctgaatcaccggtctctgttcctcttgagcag 23426724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 175 - 260
Target Start/End: Complemental strand, 4941390 - 4941305
Alignment:
Q  175 tttttagggtgtttatttt-caggtgttccgcctatatacgacgccttttgtttgtattctcagtttcaccggtctctgttcgtctt 260  Q
    |||||| |||||||||||| ||||||||||| ||||||||| ||| || | ||||||||||| |||||  ||||| |||||||||||    
T  4941390 tttttatggtgtttatttttcaggtgttccgtctatatacggcgcattct-tttgtattctctgtttcgtcggtccctgttcgtctt 4941305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 184 - 266
Target Start/End: Complemental strand, 24072000 - 24071918
Alignment:
Q  184 tgtttattttcaggtgttccgcctatatacgacgccttttgtttgtattctcagtttcaccggtctctgttcgtctttagcag 266  Q
    ||||||||||| ||||||||||||||||||| |||| || ||||||||| || |  ||| |||||| |||| ||||| |||||    
T  24072000 tgtttattttcgggtgttccgcctatatacggcgcccttagtttgtattatctgaatcatcggtctttgtttgtcttaagcag 24071918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 148 - 213
Target Start/End: Original strand, 37108105 - 37108170
Alignment:
Q  148 tttttgtgggtgttgtcctcaatgatgtttttagggtgtttattttcaggtgttccgcctatatac 213  Q
    |||| ||||||||| ||||||  | |||||||||||||||||||||  | ||||||||||||||||    
T  37108105 ttttggtgggtgttatcctcatgggtgtttttagggtgtttattttttgatgttccgcctatatac 37108170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 221 - 257
Target Start/End: Original strand, 24401099 - 24401135
Alignment:
Q  221 tttgtttgtattctcagtttcaccggtctctgttcgt 257  Q
    |||||||||||||||||| ||||||||||||||||||    
T  24401099 tttgtttgtattctcagtctcaccggtctctgttcgt 24401135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 175 - 270
Target Start/End: Complemental strand, 25657867 - 25657773
Alignment:
Q  175 tttttagggtgtttattttcaggtgttccgcctatatacgacgccttttgtttgtattctcagtttcaccggtctctgttcgtctttagcagggat 270  Q
    |||||| |||||||||||| |||||||| ||||||||||| ||||| | ||||||| ||||   ||||||| | | ||||||| || |||||||||    
T  25657867 tttttatggtgtttatttt-aggtgttctgcctatatacggcgcctgtagtttgtaatctcttattcaccgatttatgttcgttttgagcagggat 25657773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 175 - 245
Target Start/End: Complemental strand, 4914247 - 4914177
Alignment:
Q  175 tttttagggtgtttattttcaggtgttccgcctatatacgacgccttttgtttgtattctcagtttcaccg 245  Q
    ||||||| | ||||||| || | |||||||| |||||||||| |||||  || ||||||||||||||||||    
T  4914247 tttttagagggtttattatcggatgttccgcatatatacgacacctttaattagtattctcagtttcaccg 4914177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 195 - 224
Target Start/End: Complemental strand, 34345860 - 34345831
Alignment:
Q  195 aggtgttccgcctatatacgacgccttttg 224  Q
    ||||||||||||||||||||||||||||||    
T  34345860 aggtgttccgcctatatacgacgccttttg 34345831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 103; Significance: 5e-51; HSPs: 26)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 103; E-Value: 5e-51
Query Start/End: Original strand, 13 - 294
Target Start/End: Complemental strand, 38637143 - 38636863
Alignment:
Q  13 tttggtgttcaggactgagagttttactttgaggggtgtttttagaagggggtgagtagtgacgatagatggttggatatcatttatacagtggtcattt 112  Q
    ||||||||||| || || |||||||| | | ||||||||||||  ||||||||||||||||||||| | |||||||||||||||| ||||| |||  |||    
T  38637143 tttggtgttcaagattgggagttttagtataaggggtgtttttctaagggggtgagtagtgacgatgggtggttggatatcatttttacagcggttgttt 38637044  T
Q  113 tcgtgaaggagtctattttagatgatgatgcgtattttttgtgggtgttgtcctcaatgatgtt-tttagggtgtttattttcaggtgttccgcctatat 211  Q
    |||||||||||| | |||||| || |||   |||||||  |||||||||||||||   | | || |||| ||||||||||||||||||||||||||| ||    
T  38637043 tcgtgaaggagtttgttttaggtggtgacatgtattttc-gtgggtgttgtcctcgggggttttatttaaggtgtttattttcaggtgttccgccta-at 38636946  T
Q  212 acgacgccttttgtttgtattctcagtttcaccggtctctgttcgtctttagcagggatttggttgtttaatagaatttgctg 294  Q
    ||| ||||| ||||||||| ||||| ||||||||||||||||||||| | | | ||||  ||||||||||||| |||||||||    
T  38636945 acggcgcctcttgtttgtagtctcattttcaccggtctctgttcgtcctgaacggggacctggttgtttaataaaatttgctg 38636863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 101; E-Value: 8e-50
Query Start/End: Original strand, 12 - 291
Target Start/End: Complemental strand, 41117878 - 41117600
Alignment:
Q  12 gtttggtgttcaggactgagagttttactttgaggggtgtttttagaagggggtgagtagtgacgatagatggttggatatcatttatacagtggtcatt 111  Q
    |||||||||||| ||  | |||||||| | ||||||||||||||  || |||||||||| ||||||| | |||||||||||| ||| ||||  |||  ||    
T  41117878 gtttggtgttcatgatcgggagttttattctgaggggtgtttttctaaaggggtgagtaatgacgatgggtggttggatatcgtttttacaacggttgtt 41117779  T
Q  112 ttcgtgaaggagtctattttagatgatgatgcgtattttttgtgggtgttgtcctcaatgatgtt-tttagggtgtttattttcaggtgttccgcctata 210  Q
    |||||| | |||||| || ||| || ||||  |||||||  |||||||||||||||| || |||| |||||||||||||||||| |||||||||||||||    
T  41117778 ttcgtgcatgagtctgttctaggtggtgatatgtattttg-gtgggtgttgtcctca-tggtgttatttagggtgtttattttcgggtgttccgcctata 41117681  T
Q  211 tacgacgccttttgtttgtattctcagtttcaccggtctctgttcgtctttagcagggatttggttgtttaatagaatttg 291  Q
    ||||| |||| ||||||||| ||||| ||||||| ||||||||||||||| ||||| ||| | ||||||||||| ||||||    
T  41117680 tacgatgcctcttgtttgtagtctcaatttcacctgtctctgttcgtcttgagcagagatctagttgtttaataaaatttg 41117600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 180 - 297
Target Start/End: Original strand, 42719494 - 42719611
Alignment:
Q  180 agggtgtttattttcaggtgttccgcctatatacgacgccttttgtttgtattctcagtttcaccggtctctgttcgtctttagcagggatttggttgtt 279  Q
    ||||||||||||||||||| |||||| |||||||| || ||||||||||||||||||||||||||||||||| |||||||| |||||||||||| |||||    
T  42719494 agggtgtttattttcaggttttccgcttatatacggcgtcttttgtttgtattctcagtttcaccggtctctattcgtcttgagcagggatttgattgtt 42719593  T
Q  280 taatagaatttgctgctt 297  Q
    ||||| |||||| |||||    
T  42719594 taataaaatttgttgctt 42719611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 13 - 280
Target Start/End: Complemental strand, 16832931 - 16832663
Alignment:
Q  13 tttggtgttcaggactgagagttttactttgaggggtgtttttagaagggggtgagtagtgacgatagatggt--tggatatcatttatacagtggtcat 110  Q
    ||||||||||| ||||| |||||| | ||||||||||||||||     |||||||||||||||||  | ||||  |||||||| ||| ||||| |||| |    
T  16832931 tttggtgttcaagactgtgagtttaattttgaggggtgttttttctttggggtgagtagtgacgacgggtggtgttggatatcttttttacagcggtcgt 16832832  T
Q  111 ttt-cgtgaaggagtctattttagatgatgatgcgtattttttgtgggtgttgtcctcaatgatgtttttagggtgtttattttcaggtgttccgcctat 209  Q
    ||| |||| |||| | | |||||| || |||  ||| | ||| ||||||||||||||||     ||||||||||||||||||||  ||||||||||||||    
T  16832831 ttttcgtgcaggaatatgttttaggtggtga--cgtttatttggtgggtgttgtcctcaggagagtttttagggtgtttattttttggtgttccgcctat 16832734  T
Q  210 atacgacgccttttgtttgtattctcagtttcaccggtctctgttcgtctttagcagggatttggttgttt 280  Q
    || |  |||||||||||||||||||||||||||||| | |||||| ||||| || |||| | |||||||||    
T  16832733 atgcagcgccttttgtttgtattctcagtttcaccgatttctgtttgtcttgagaaggggtctggttgttt 16832663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 206 - 294
Target Start/End: Original strand, 9262807 - 9262895
Alignment:
Q  206 ctatatacgacgccttttgtttgtattctcagtttcaccggtctctgttcgtctttagcagggatttggttgtttaatagaatttgctg 294  Q
    ||||||||| ||||||||||||||||||||||||||| |||||| |||||||||| ||| ||||||||||||||||||| |||||||||    
T  9262807 ctatatacggcgccttttgtttgtattctcagtttcatcggtctttgttcgtcttgagcggggatttggttgtttaataaaatttgctg 9262895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 13 - 161
Target Start/End: Original strand, 49528243 - 49528390
Alignment:
Q  13 tttggtgttcaggactgagagttttactttgaggggtgtttttagaagggggtgagtagtgacgatagatggttggatatcatttatacagtggtcattt 112  Q
    ||||||||||| |||||||||||||| ||||||||||||||||  ||||||||||||||||| ||| |||||||| ||||| |||  | |||||||  |     
T  49528243 tttggtgttcaagactgagagttttattttgaggggtgtttttctaagggggtgagtagtgaagatggatggttgaatatcgttttaatagtggtcggtg 49528342  T
Q  113 tcgtgaaggagtctattttagatgatgatgcgtattttttgtgggtgtt 161  Q
    || |||||||||||||||||| |||||| | || ||||| |||||||||    
T  49528343 tcatgaaggagtctattttaggtgatgacgtgt-tttttggtgggtgtt 49528390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 175 - 266
Target Start/End: Original strand, 28967208 - 28967299
Alignment:
Q  175 tttttagggtgtttattttcaggtgttccgcctatatacgacgccttttgtttgtattctcagtttcaccggtctctgttcgtctttagcag 266  Q
    |||||||||||||||||||||||||||||||||||||||  ||||||| ||||||||| || ||||||||| |||||||||||||| |||||    
T  28967208 tttttagggtgtttattttcaggtgttccgcctatatacagcgcctttcgtttgtattatctgtttcaccgatctctgttcgtcttgagcag 28967299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 13 - 293
Target Start/End: Complemental strand, 19815130 - 19814847
Alignment:
Q  13 tttggtgttcaggactgagagttttactttgaggggtgtttttagaagggggtgagtagtgacgatagatggt--tggatatcatttatacagtggtcat 110  Q
    ||||||||| |||||||||||||| |  |||||  ||||| || |   ||||||||||||||| |  ||||||  |||||||||||| ||| ||||||||    
T  19815130 tttggtgttgaggactgagagtttaatcttgagaagtgttctttg---ggggtgagtagtgacaacggatggtattggatatcatttttaccgtggtcat 19815034  T
Q  111 tttcgtgaaggagtctattttagatgatgatg-cgtattttttg-tgggtgttgtcctcaatgatgt-ttttagggtgtttattttcaggtgttccgcct 207  Q
    ||||||||||  |||| ||| || |  || || ||| ||||||| |||||||||||||  |   ||| ||||| | ||||||||||  ||||||| || |    
T  19815033 tttcgtgaagacgtctgtttgaggtactggtgacgtgttttttggtgggtgttgtccttgaaagtgtcttttatgatgtttatttttgggtgttctgctt 19814934  T
Q  208 atatacgacgcctttt-gtttgtattctcagtttcaccggtctctgttcgtctttagcagggatttggttgtttaatagaatttgct 293  Q
    |||||| ||||||||| ||||||| |||| |||| | ||||||||||||||||| ||||||||| |||||||| |||| ||||||||    
T  19814933 atatacaacgccttttagtttgtactctctgttttatcggtctctgttcgtcttgagcagggatctggttgttaaataaaatttgct 19814847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 60 - 270
Target Start/End: Complemental strand, 22811023 - 22810826
Alignment:
Q  60 gggggtgagtagtgacgatagatggttggatatcatttatacagtggtcattttcgtgaaggagtctattttagatgatgatgcgtattttttgtgggtg 159  Q
    ||||||||||||||||||| |||||| ||||||| ||| ||||||||||  |||||||||| ||||| ||||||  | ||| | |||||||  |||||||    
T  22811023 gggggtgagtagtgacgatggatggtaggatatcgtttttacagtggtcggtttcgtgaagcagtctgttttaggaggtgacgtgtattttg-gtgggtg 22810925  T
Q  160 ttgtcctcaatgatgtttttagggtgtttattttcaggtgttccgcctatatacgacgccttttgtttgtattctcagtttcaccggtctctgttcgtct 259  Q
      ||||||           ||||||||||| |||| | | |||||| |||||||| ||||||| ||||||||||||| ||||||| ||||||||||||||    
T  22810924 aggtcctc-----------tagggtgtttactttcggatattccgcttatatacggcgccttt-gtttgtattctcaatttcaccagtctctgttcgtct 22810837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 181 - 267
Target Start/End: Original strand, 48098645 - 48098731
Alignment:
Q  181 gggtgtttattttcaggtgttccgcctatatacgacgccttttgtttgtattctcagtttcaccggtctctgttcgtctttagcagg 267  Q
    |||||||||||||| ||||||||||||||||||  || |||||||||||||| |||||||||||| |||| ||||||||| ||||||    
T  48098645 gggtgtttattttcgggtgttccgcctatatactgcgtcttttgtttgtattttcagtttcaccgatctccgttcgtcttgagcagg 48098731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 196 - 294
Target Start/End: Original strand, 52009179 - 52009277
Alignment:
Q  196 ggtgttccgcctatatacgacgccttttgtttgtattctcagtttcaccggtctctgttcgtctttagcagggatttggttgtttaatagaatttgctg 294  Q
    ||||||||||||||||||| |||||| |||||| || ||||||||||||| ||||| ||||||||  |||||||| |||| |||||||| |||||||||    
T  52009179 ggtgttccgcctatatacggcgccttatgtttgcatgctcagtttcaccgatctctattcgtcttgggcagggatctggtagtttaataaaatttgctg 52009277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 175 - 291
Target Start/End: Complemental strand, 2061580 - 2061464
Alignment:
Q  175 tttttagggtgtttattttcaggtgttccgcctatatacgacgccttttgtttgtattctcagtttcaccggtctctgttcgtctttagcagggatttgg 274  Q
    ||||||| ||||||||| |||| |||||||||||||||| |  ||| ||||||||||||||||||||| | || ||||||||||||  |||||||| ||     
T  2061580 tttttagtgtgtttattatcagatgttccgcctatatacaagacctcttgtttgtattctcagtttcatcagtttctgttcgtcttgggcagggatctga 2061481  T
Q  275 ttgtttaatagaatttg 291  Q
     ||||||||| ||||||    
T  2061480 ctgtttaataaaatttg 2061464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 173 - 292
Target Start/End: Original strand, 25754206 - 25754325
Alignment:
Q  173 tgtttttagggtgtttattttcaggtgttccgcctatatacgacgccttttgtttgtattctcagtttcaccggtctctgttcgtctttagcagggattt 272  Q
    |||||||| ||||||||||||||| ||||||| ||||||||| ||| |||| |||||||||||||||  || ||||| |||||||||| | || |||||     
T  25754206 tgtttttatggtgtttattttcagatgttccgtctatatacggcgctttttatttgtattctcagttatactggtctttgttcgtcttgaacatggatta 25754305  T
Q  273 ggttgtttaatagaatttgc 292  Q
     ||||||||| | |||||||    
T  25754306 tgttgtttaacaaaatttgc 25754325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 99 - 291
Target Start/End: Original strand, 49747785 - 49747977
Alignment:
Q  99 tacagtggtcattttcgtgaaggagtctattttagatgatgatgcgtattttttgtgggtgttgtcctcaatgatgttttt-agggtgtttattttcagg 197  Q
    |||| ||||| |||||||||| |||||| |||||| || |||   | |||||  ||||||||||||||||  | ||||||| | ||||||||||||  |     
T  49747785 tacaatggtcgttttcgtgaaagagtctgttttaggtggtgacatgaattttg-gtgggtgttgtcctcagaggtgttttttatggtgtttatttttgga 49747883  T
Q  198 tgttccgcctatatacgacgccttttgtttgtattctcagtttcaccggtctctgttcgtctttagcagggatttggttgtttaatagaatttg 291  Q
    |||||||| ||||||||| | ||||||||||||| || | ||||||| |||||| |||||||| |||  | || ||||||||||||| ||||||    
T  49747884 tgttccgcatatatacgatgtcttttgtttgtatgctaaatttcaccagtctctattcgtcttgagcgagaatatggttgtttaataaaatttg 49747977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 13 - 168
Target Start/End: Original strand, 25753343 - 25753499
Alignment:
Q  13 tttggtgttcaggactgagagttttactttgaggggtgtttttagaagggggtgagtagtgacgatagatg--gttggatatcatttatacagtggtcat 110  Q
    |||| ||||||||||||| ||||| | ||||||||||||||||    |||||||||||||||||||  |||  |||||||| |  || |||||||| | |    
T  25753343 tttgatgttcaggactgaaagtttaattttgaggggtgtttttctttgggggtgagtagtgacgatgaatgatgttggataccgattttacagtggccct 25753442  T
Q  111 tttcgtgaaggagtctattttagatgatgatgcgtattttttgtgggtgttgtcctca 168  Q
    |||||||||||||| | |||||| ||||||   ||| |||| ||||||||||||||||    
T  25753443 tttcgtgaaggagtttgttttaggtgatgacttgta-ttttggtgggtgttgtcctca 25753499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 186 - 284
Target Start/End: Complemental strand, 35948044 - 35947946
Alignment:
Q  186 tttattttcaggtgttccgcctatatacgacgccttttgtttgtattctcagtttcaccggtctctgttcgtctttagcagggatttggttgtttaata 284  Q
    ||||||||| |||||||||| |||||| | || ||||||||||||||||||| |||||  || | |||||||||| |||| |||| |||||||||||||    
T  35948044 tttattttcgggtgttccgcttatatatggcgtcttttgtttgtattctcagattcactagtatatgttcgtcttaagcaaggatctggttgtttaata 35947946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 188 - 292
Target Start/End: Complemental strand, 20632233 - 20632128
Alignment:
Q  188 tattttcaggtgttccgcctatatacgacgcctttt-gtttgtattctcagtttcaccggtctctgttcgtctttagcagggatttggttgtttaataga 286  Q
    ||||||| ||| |||||||||||||| ||||||||| |||||||||||| |  ||||||||||| ||||||||| |||||| || || || || |||| |    
T  20632233 tattttcgggtattccgcctatatacaacgccttttagtttgtattctctgaatcaccggtctcagttcgtcttaagcaggaatctgttttttaaataaa 20632134  T
Q  287 atttgc 292  Q
    ||||||    
T  20632133 atttgc 20632128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 183 - 256
Target Start/End: Original strand, 46487621 - 46487694
Alignment:
Q  183 gtgtttattttcaggtgttccgcctatatacgacgccttttgtttgtattctcagtttcaccggtctctgttcg 256  Q
    |||||||||||| | |||||||||||||||||| |||||| ||||||||||||    |||||||||||||||||    
T  46487621 gtgtttattttcggatgttccgcctatatacgatgcctttagtttgtattctctaaatcaccggtctctgttcg 46487694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 13 - 120
Target Start/End: Original strand, 19673271 - 19673377
Alignment:
Q  13 tttggtgttcaggactgagagttttactttgaggggtgtttttagaagggggtgagtagtgacgatagatg--gttggatatcatttatacagtggtcat 110  Q
    ||||||||| |||||||||||||| | ||||||| ||||| ||    ||||||||||||||||||  ||||  |||||||||   || ||||||||||||    
T  19673271 tttggtgttgaggactgagagtttaattttgaggagtgttctt---tgggggtgagtagtgacgacggatggtgttggatattgcttttacagtggtcat 19673367  T
Q  111 tttcgtgaag 120  Q
    ||||||||||    
T  19673368 tttcgtgaag 19673377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 182 - 230
Target Start/End: Original strand, 43077307 - 43077355
Alignment:
Q  182 ggtgtttattttcaggtgttccgcctatatacgacgccttttgtttgta 230  Q
    ||||||||||||||||||||| ||||||||||||||  |||||||||||    
T  43077307 ggtgtttattttcaggtgttctgcctatatacgacgtattttgtttgta 43077355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 196 - 294
Target Start/End: Complemental strand, 21983601 - 21983504
Alignment:
Q  196 ggtgttccgcctatatacgacgccttttgtttgtattctcagtttcaccggtctctgttcgtctttagcagggatttggttgtttaatagaatttgctg 294  Q
    ||||||||||||||||| | ||| |||  ||| |||| ||  ||||| ||||||||||||||||| ||||||||| || || ||||||| |||||||||    
T  21983601 ggtgttccgcctatatatggcgcttttcatttatattttctatttcatcggtctctgttcgtcttgagcagggatctgatt-tttaataaaatttgctg 21983504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 175 - 233
Target Start/End: Complemental strand, 39420784 - 39420726
Alignment:
Q  175 tttttagggtgtttattttcaggtgttccgcctatatacgacgccttttgtttgtattc 233  Q
    |||||| |||||| |||||| ||||||||||||||||||||| |||||| ||| |||||    
T  39420784 tttttatggtgttcattttcgggtgttccgcctatatacgacaccttttatttatattc 39420726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 192 - 269
Target Start/End: Original strand, 16502053 - 16502123
Alignment:
Q  192 ttcaggtgttccgcctatatacgacgccttttgtttgtattctcagtttcaccggtctctgttcgtctttagcaggga 269  Q
    ||||||||||||||||||||||  |||||||||||||||        ||||||||||||||||||||||  |||||||    
T  16502053 ttcaggtgttccgcctatatacagcgccttttgtttgta-------cttcaccggtctctgttcgtcttgtgcaggga 16502123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 174 - 254
Target Start/End: Original strand, 38930120 - 38930200
Alignment:
Q  174 gtttttagggtgtttatttt-caggtgttccgcctatatacgacgccttttgtttgtattctcagtttcaccggtctctgtt 254  Q
    ||||||| |||||||||||| | |||||||| |||||||||| | ||||| ||||||| | |  ||||||||||||||||||    
T  38930120 gtttttatggtgtttatttttcgggtgttccacctatatacggctcctttcgtttgtact-tatgtttcaccggtctctgtt 38930200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 186 - 294
Target Start/End: Original strand, 12296518 - 12296625
Alignment:
Q  186 tttattttcaggtgttccgcctatatacgacgccttttgtttgtattctcagtttcaccggtctctgttcgtctttagcagggatttggttgtttaatag 285  Q
    ||||||||  ||||||| |||| |||||||| | ||| |||||||||||| |  ||| |||||||| ||||| || ||||| ||| ||||| || ||||     
T  12296518 tttatttttgggtgttctgcctgtatacgacacatttagtttgtattctctgaatcatcggtctctattcgttttgagcagagatctggtt-ttaaataa 12296616  T
Q  286 aatttgctg 294  Q
    |||||||||    
T  12296617 aatttgctg 12296625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 186 - 230
Target Start/End: Original strand, 35336914 - 35336958
Alignment:
Q  186 tttattttcaggtgttccgcctatatacgacgccttttgtttgta 230  Q
    ||||||||| | ||||||| ||||||||| |||||||||||||||    
T  35336914 tttattttcggatgttccgtctatatacggcgccttttgtttgta 35336958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 100; Significance: 3e-49; HSPs: 22)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 147 - 290
Target Start/End: Complemental strand, 42533035 - 42532892
Alignment:
Q  147 ttttttgtgggtgttgtcctcaatgatgtttttagggtgtttattttcaggtgttccgcctatatacgacgccttttgtttgtattctcagtttcaccgg 246  Q
    |||||||||||||||||| |||| |  ||||||||||||||||||| ||||||||||||||||||||| ||||||||| |||||||||||||| ||||||    
T  42533035 ttttttgtgggtgttgtcatcaagggagtttttagggtgtttatttccaggtgttccgcctatatacggcgccttttggttgtattctcagttccaccgg 42532936  T
Q  247 tctctgttcgtctttagcagggatttggttgtttaatagaattt 290  Q
    |||||||||||||| ||||||||||||||||| ||||| |||||    
T  42532935 tctctgttcgtcttgagcagggatttggttgtctaataaaattt 42532892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 86; E-Value: 7e-41
Query Start/End: Original strand, 13 - 265
Target Start/End: Complemental strand, 24324707 - 24324456
Alignment:
Q  13 tttggtgttcaggactgagagttttactttgaggggtgtttttagaagggggtgagtagtgacgatagatggttggatatcatttatacagtggtcattt 112  Q
    ||||||||||||||| |||||||||| ||||||||||||||||     |||||||||||||||||| | |||||||||||| ||  |||| ||||| |||    
T  24324707 tttggtgttcaggacggagagttttattttgaggggtgtttttctttaggggtgagtagtgacgatgg-tggttggatatcgttcttacaatggtcgttt 24324609  T
Q  113 t-cgtgaaggagtctattttagatgatgatgcgtattttttgtgggtgttgtcctcaatgatgtttttagggtgtttattttcaggtgttccgcctatat 211  Q
    | ||||||||||||| |||||  || ||| | |||||||  ||| ||||||||||||| | ||||||||| |||||||||||| |||||| |  ||||||    
T  24324608 ttcgtgaaggagtctgttttaagtggtgacgtgtattttg-gtgagtgttgtcctcaagggtgtttttagagtgtttattttcgggtgtttcagctatat 24324510  T
Q  212 acgacgccttttgtttgtattctcagtttcaccggtctctgttcgtctttagca 265  Q
    | ||||  ||||||||||||||||| ||||| || ||||| |||||||| ||||    
T  24324509 atgacgttttttgtttgtattctcactttcatcgatctctattcgtcttgagca 24324456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 61 - 290
Target Start/End: Original strand, 33719183 - 33719413
Alignment:
Q  61 ggggtgagtagtgacgat-agatg-gttggatatcatttatacagtggtcattttc-gtgaaggagtctattttagatgatgatgcgtattttttgtggg 157  Q
    |||||||||||||||||| ||  | |||||||||||||| ||||| |||| ||||  |||||||||||  ||||||  | ||||  |||||||  |||||    
T  33719183 ggggtgagtagtgacgatgagtagtgttggatatcatttttacagaggtcgttttttgtgaaggagtcggttttaggcggtgataggtattttg-gtggg 33719281  T
Q  158 tgttgtcctcaatga-tgtttttagggtgtttattttcaggtgttccgcctatatacgacgccttttgtttgtattctcagtttcaccggtctctgttcg 256  Q
    ||||||||||| ||| ||||||||||||||||| |||| | |||||||||||||| |  |||| ||||||||||||||||||||||||| ||||||||||    
T  33719282 tgttgtcctca-tgagtgtttttagggtgtttactttc-gatgttccgcctatattcagcgccgtttgtttgtattctcagtttcaccgatctctgttcg 33719379  T
Q  257 tctttagcagggatttggttgtttaatagaattt 290  Q
    |||| ||||||||| ||||||||||||| |||||    
T  33719380 tcttgagcagggatctggttgtttaataaaattt 33719413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 196 - 291
Target Start/End: Complemental strand, 6726146 - 6726051
Alignment:
Q  196 ggtgttccgcctatatacgacgccttttgtttgtattctcagtttcaccggtctctgttcgtctttagcagggatttggttgtttaatagaatttg 291  Q
    ||||||||||||||||||| ||  |||||||||||||||||||||||||| |||||||||||||| ||||| ||| ||||||||||||| ||||||    
T  6726146 ggtgttccgcctatatacggcgttttttgtttgtattctcagtttcaccgatctctgttcgtcttgagcagagatctggttgtttaataaaatttg 6726051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 128 - 260
Target Start/End: Complemental strand, 16828894 - 16828763
Alignment:
Q  128 ttttagatgatgatgcgtattttttgtgggtgttgtcctcaatgatgtttttagggtgtttattttcaggtgttccgcctatatacgacgccttttgttt 227  Q
    ||||||||||||||| |||||||  |||| |||| || |||  | | ||| |||| ||||||||||| ||||||||||||||||||| ||| ||||||||    
T  16828894 ttttagatgatgatgtgtattttg-gtggttgttttcttcaggggtatttctaggatgtttattttcgggtgttccgcctatatacggcgcattttgttt 16828796  T
Q  228 gtattctcagtttcaccggtctctgttcgtctt 260  Q
    |||||||||||||||||||||| |||| |||||    
T  16828795 gtattctcagtttcaccggtctttgtttgtctt 16828763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 60 - 291
Target Start/End: Original strand, 1321011 - 1321241
Alignment:
Q  60 gggggtgagtagtgacgatagatggt--tggatatcatttatacagtggtcattttcgtgaa-ggagtctattttagatgatgatgcgtattttttgtgg 156  Q
    |||||||||||||||||||   ||||  | |||||| ||| |||||||||   ||||||||| || |||| |||||| || ||||| |||||||  ||||    
T  1321011 gggggtgagtagtgacgatgagtggtattagatatcgtttttacagtggttgctttcgtgaaaggggtctgttttaggtggtgatgtgtattttg-gtgg 1321109  T
Q  157 gtgttgtcctcaatgatgtttttagggtgtttattttcaggtgttccgcctatatacgacgccttttgtttgtattctcagtttcaccggtctctgttcg 256  Q
     || |||| |||| |  ||||||||||||||||||||| || |||||||||||||||| || | |  ||||||||||||||||||| || |||| |||||    
T  1321110 atggtgtcttcaaggg-gtttttagggtgtttattttcgggagttccgcctatatacggcgtcgt--gtttgtattctcagtttcatcgatctccgttcg 1321206  T
Q  257 tctttagcagggatttggttgtttaatagaatttg 291  Q
    |||| || || ||| ||||||||||||| ||||||    
T  1321207 tcttgagtagagatgtggttgtttaataaaatttg 1321241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 187 - 294
Target Start/End: Complemental strand, 28534240 - 28534134
Alignment:
Q  187 ttattttcaggtgttccgcctatatacgacgccttttgtttgtattctcagtttcaccggtctctgttcgtctttagcagggatttggttgtttaataga 286  Q
    |||||||| ||||||||||||||||||| |||||||| |||||||||||    ||||||||||||||||||||| ||||  ||||||||| ||||||| |    
T  28534240 ttattttcgggtgttccgcctatatacggcgccttttatttgtattctctaaatcaccggtctctgttcgtcttgagcaaagatttggtt-tttaataaa 28534142  T
Q  287 atttgctg 294  Q
    ||||||||    
T  28534141 atttgctg 28534134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 180 - 291
Target Start/End: Original strand, 44755906 - 44756016
Alignment:
Q  180 agggtgtttattttcaggtgttccgcctatatacgacgccttttgtttgtattctcagtttcaccggtctctgttcgtctttagcagggatttggttgtt 279  Q
    |||||||||||||| ||||||| ||||||||||| ||||||||||||||||| || |||||||| | |||  ||||||||| ||||||||| | ||||||    
T  44755906 agggtgtttatttt-aggtgtttcgcctatatacaacgccttttgtttgtatgcttagtttcactgatcttcgttcgtcttgagcagggatctagttgtt 44756004  T
Q  280 taatagaatttg 291  Q
    ||||| ||||||    
T  44756005 taataaaatttg 44756016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 176 - 294
Target Start/End: Original strand, 3478683 - 3478800
Alignment:
Q  176 ttttagggtgtttattttcaggtgttccgcctatatacgacgccttt-tgtttgtattctcagtttcaccggtctctgttcgtctttagcagggatttgg 274  Q
    ||||||||||||||||||| ||||||||||||||||||| |||||||  | ||| | ||||  ||||||||||||||||| ||||| | ||||||| |||    
T  3478683 ttttagggtgtttattttcgggtgttccgcctatatacggcgcctttcaggttgcactctc--tttcaccggtctctgtttgtcttgatcagggatctgg 3478780  T
Q  275 ttgtttaatagaatttgctg 294  Q
    ||||| |||| |||||||||    
T  3478781 ttgttaaataaaatttgctg 3478800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 175 - 291
Target Start/End: Complemental strand, 6716484 - 6716368
Alignment:
Q  175 tttttagggtgtttattttcaggtgttccgcctatatacgacgccttttgtttgtattctcagtttcaccggtctctgttcgtctttagcagggatttgg 274  Q
    ||||||||||||||||||||||||||||||  |||||||| | |||||  ||||||||||| |||||| | ||||| ||| ||||| |||||||| ||||    
T  6716484 tttttagggtgtttattttcaggtgttccggttatatacggcccctttaatttgtattctctgtttcatctgtctcggtttgtcttgagcagggacttgg 6716385  T
Q  275 ttgtttaatagaatttg 291  Q
    | ||| |||| ||||||    
T  6716384 tggttaaataaaatttg 6716368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 181 - 284
Target Start/End: Original strand, 8745469 - 8745571
Alignment:
Q  181 gggtgtttattttcaggtgttccgcctatatacgacgccttttgtttgtattctcagtttcaccggtctctgttcgtctttagcagggatttggttgttt 280  Q
    |||||||| ||||| ||||||||||||||||||| || || |||||| |||| ||||||||||| ||||||||||||||| |  ||||||||| ||||||    
T  8745469 gggtgttt-ttttcgggtgttccgcctatatacggcgtctcttgtttctattttcagtttcaccagtctctgttcgtcttgaatagggatttgattgttt 8745567  T
Q  281 aata 284  Q
    ||||    
T  8745568 aata 8745571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 196 - 290
Target Start/End: Complemental strand, 48058399 - 48058306
Alignment:
Q  196 ggtgttccgcctatatacgacgccttttgtttgtattctcagtttcaccggtctctgttcgtctttagcagggatttggttgtttaatagaattt 290  Q
    ||||||||||||||||| ||||||||| ||||||||||||  ||||||||||||||||| ||||| ||||| ||| ||||| ||||||| |||||    
T  48058399 ggtgttccgcctatatatgacgcctttcgtttgtattctctatttcaccggtctctgtttgtcttgagcagagatatggtt-tttaataaaattt 48058306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 148 - 260
Target Start/End: Original strand, 16954795 - 16954906
Alignment:
Q  148 tttttgtgggtgttgtcctcaatgatgtttttagggtgtttattttcaggtgttccgcctatatacgacgccttttgtttgtattctcagtttcaccggt 247  Q
    ||||||||| |||| || |||  | ||||||||| |||||||||||| | |||||||||||||||||  ||||||| |||||| ||||||||||||||||    
T  16954795 tttttgtggttgttttcttcaggggtgtttttagcgtgtttattttcggatgttccgcctatatacggtgccttttatttgta-tctcagtttcaccggt 16954893  T
Q  248 ctctgttcgtctt 260  Q
    || |||| |||||    
T  16954894 ctttgtttgtctt 16954906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 181 - 293
Target Start/End: Original strand, 36674809 - 36674921
Alignment:
Q  181 gggtgtttattttcaggtgttccgcctatatacgacgccttttgtttgtattctcagtttcaccggtctctgttcgtctttagcagggatttggttgttt 280  Q
    |||||||||||||| | | ||||||||||||||||||||||||||||||||   || |||||||| |||||||||||||| ||  || || | |||||||    
T  36674809 gggtgtttattttcggatattccgcctatatacgacgccttttgtttgtatctccaatttcaccgatctctgttcgtcttgagtcggaatctagttgttt 36674908  T
Q  281 aatagaatttgct 293  Q
    ||||  |||||||    
T  36674909 aataatatttgct 36674921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 196 - 291
Target Start/End: Complemental strand, 47456800 - 47456706
Alignment:
Q  196 ggtgttccgcctatatacgacgccttttgtttgtattctcagtttcaccggtctctgttcgtctttagcagggatttggttgtttaatagaatttg 291  Q
    ||||||||||||||||||  |||||||  |||||||| || |||||||||||||||||||||||| ||||| ||| ||||| ||||||| ||||||    
T  47456800 ggtgttccgcctatatactgcgcctttcatttgtattttctgtttcaccggtctctgttcgtcttgagcagagatctggtt-tttaataaaatttg 47456706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 158 - 243
Target Start/End: Original strand, 39013558 - 39013643
Alignment:
Q  158 tgttgtcctcaatgatgtttttagggtgtttattttcaggtgttccgcctatatacgacgccttttgtttgtattctcagtttcac 243  Q
    |||||||||||  | |||||| |||||||||||||| |||| ||||| |||||||| ||| || ||||||||||||||||||||||    
T  39013558 tgttgtcctcatagttgttttcagggtgtttatttttaggtattccgtctatatacaacgtctcttgtttgtattctcagtttcac 39013643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 197 - 234
Target Start/End: Complemental strand, 22567818 - 22567781
Alignment:
Q  197 gtgttccgcctatatacgacgccttttgtttgtattct 234  Q
    |||||||||||||||||| |||||||||||||||||||    
T  22567818 gtgttccgcctatatacggcgccttttgtttgtattct 22567781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 13 - 77
Target Start/End: Original strand, 8745324 - 8745388
Alignment:
Q  13 tttggtgttcaggactgagagttttactttgaggggtgtttttagaagggggtgagtagtgacga 77  Q
    ||||||||||| ||||| |||||| | ||||||||||||||||    ||||||||||||||||||    
T  8745324 tttggtgttcaagactgggagtttaattttgaggggtgtttttctttgggggtgagtagtgacga 8745388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 185 - 232
Target Start/End: Original strand, 13312180 - 13312227
Alignment:
Q  185 gtttattttcaggtgttccgcctatatacgacgccttttgtttgtatt 232  Q
    |||||||||| |||||||||||||||||| | |||||| |||||||||    
T  13312180 gtttattttcgggtgttccgcctatatacaaagcctttagtttgtatt 13312227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 175 - 291
Target Start/End: Original strand, 25438690 - 25438807
Alignment:
Q  175 tttttagggtgttta-ttttcaggtgttccgcctatatacgacgccttttgtttgtattctcag-tttcaccggtctctgttcgtctttagcagggattt 272  Q
    |||||| |||||||| ||||| |||||||||||||||||||  || | | |||||||||| | | ||||| |||| |||||||||||| || | |||| |    
T  25438690 tttttatggtgtttacttttcgggtgttccgcctatatacggggcatatcgtttgtattcgctgttttcatcggtatctgttcgtcttgagtatggatct 25438789  T
Q  273 ggttgtttaatagaatttg 291  Q
    |||| ||||||| ||||||    
T  25438790 ggtt-tttaataaaatttg 25438807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 200 - 276
Target Start/End: Complemental strand, 9427801 - 9427725
Alignment:
Q  200 ttccgcctatatacgacgccttttgtttgtattctcagtttcaccggtctctgttcgtctttagcagggatttggtt 276  Q
    |||||||||||||||  || ||| ||||||||||||    |||||| |||||||||||||| |||| |||| |||||    
T  9427801 ttccgcctatatacgttgcatttagtttgtattctctaaatcaccgatctctgttcgtcttgagcaaggatctggtt 9427725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 182 - 266
Target Start/End: Original strand, 38485906 - 38485989
Alignment:
Q  182 ggtgtttattttcaggtgttccgcctatatacgacgccttttgtttgtattctcagtttcaccggtctctgttcgtctttagcag 266  Q
    ||||||| ||||| |||||||||||||| |||||||||||  |||| || | || ||  |||| ||||||||||||||| |||||    
T  38485906 ggtgtttgttttcgggtgttccgcctatttacgacgcctta-gtttatactttctgtaacaccagtctctgttcgtcttgagcag 38485989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0050 (Bit Score: 94; Significance: 1e-45; HSPs: 1)
Name: scaffold0050
Description:

Target: scaffold0050; HSP #1
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 60 - 284
Target Start/End: Original strand, 36926 - 37149
Alignment:
Q  60 gggggtgagtagtgacgatagatggttggatatcatttatacagtggtcattttcgtgaaggagtctattttagatgatgatgcgtattttttgtgggtg 159  Q
    ||||||||||||||||| | ||||||||||| || ||| |||||||||  ||| ||||||||||||| |||||| || ||| | ||||||| | ||||||    
T  36926 gggggtgagtagtgacggtggatggttggatgtcgtttttacagtggtggttt-cgtgaaggagtctgttttaggtggtgacgtgtattttgt-tgggtg 37023  T
Q  160 ttgtcctcaatgatgttttt-agggtgtttattttcaggtgttccgcctatatacgacgccttttgtttgtattctcagtttcaccggtctctgttcgtc 258  Q
    | |||||||  | ||||||| | ||||||||||||| | ||||||||||||||||  || |||||||||||||| |||||||||||||||||||||||||    
T  37024 tggtcctcatgggtgttttttatggtgtttattttcggatgttccgcctatatacagcgtcttttgtttgtattatcagtttcaccggtctctgttcgtc 37123  T
Q  259 tttagcagggatttggttgtttaata 284  Q
    || |||||||||  ||||||||||||    
T  37124 ttgagcagggatcaggttgtttaata 37149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 87; Significance: 2e-41; HSPs: 30)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 148 - 294
Target Start/End: Original strand, 27102489 - 27102634
Alignment:
Q  148 tttttgtgggtgttgtcctcaatgatgtttttagggtgtttattttcaggtgttccgcctatatacgacgccttttgtttgtattctcagtttcaccggt 247  Q
    |||| |||||||||||||||| || |||||||||||||||||||||| ||||||||||||||||||| | |||||||||||||||||||| |||||| ||    
T  27102489 ttttggtgggtgttgtcctca-tggtgtttttagggtgtttattttcgggtgttccgcctatatacggcaccttttgtttgtattctcaggttcaccagt 27102587  T
Q  248 ctctgttcgtctttagcagggatttggttgtttaatagaatttgctg 294  Q
    || |||||||||| | ||| ||| ||||||||||||| |||||||||    
T  27102588 ctttgttcgtcttgaacagagatctggttgtttaataaaatttgctg 27102634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 173 - 291
Target Start/End: Complemental strand, 9313090 - 9312972
Alignment:
Q  173 tgtttttagggtgtttattttcaggtgttccgcctatatacgacgccttttgtttgtattctcagtttcaccggtctctgttcgtctttagcagggattt 272  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||| | ||||||||||||||||||||||||| ||||| ||| |    
T  9313090 tgtttttagggtgtttattttcgggtgttccgcctatatacgacgccttttgattgtattataagtttcaccggtctctgttcgtcttgagcagagatct 9312991  T
Q  273 ggttgtttaatagaatttg 291  Q
     ||||||||||| ||||||    
T  9312990 cgttgtttaataaaatttg 9312972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 99 - 267
Target Start/End: Original strand, 34775129 - 34775297
Alignment:
Q  99 tacagtggtcattttcgtgaaggagtctattttagatgatgatgcgtattttttgtgggtgttgtcctcaatgatgttttt-agggtgtttattttcagg 197  Q
    |||||| ||| ||||||||||||||||| |||||| |||||| | |||||||  |||||||||||||||| || | ||||| | ||||||||||||| ||    
T  34775129 tacagttgtcgttttcgtgaaggagtctgttttaggtgatgacgtgtattttg-gtgggtgttgtcctcattggtattttttaaggtgtttattttcggg 34775227  T
Q  198 tgttccgcctatatacgacgccttttgtttgtattctcagtttcaccggtctctgttcgtctttagcagg 267  Q
    ||||||||||||||||| ||||||| |||||||||||||| || | |||||| |||||||||| ||||||    
T  34775228 tgttccgcctatatacggcgcctttagtttgtattctcagctttatcggtctttgttcgtcttgagcagg 34775297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 76; E-Value: 7e-35
Query Start/End: Original strand, 103 - 292
Target Start/End: Original strand, 46768437 - 46768627
Alignment:
Q  103 gtggtcattttcgtgaaggagtctattttagatgatgatgcgtattttttgtgggtgttgtcctcaatgatg-tttttagggtgtttattttcaggtgtt 201  Q
    |||||| ||||||||||||||||| |||||| || ||| | | | |||| |||||||||||||||   | || |||||||||||||||||||| ||||||    
T  46768437 gtggtcgttttcgtgaaggagtctgttttaggtggtgacgtg-aattttggtgggtgttgtcctcgggggtgttttttagggtgtttattttcgggtgtt 46768535  T
Q  202 ccgcctatatac-gacgccttttgtttgtattctcagtttcaccggtctctgttcgtctttagcagggatttggttgtttaatagaatttgc 292  Q
    ||||||| |||| | |||||||||||||||| |||| |||||||  |||||||||||||| |||| | |||||||||||||||| |||||||    
T  46768536 ccgcctacatacgggcgccttttgtttgtatgctcaatttcaccaatctctgttcgtcttgagcaagaatttggttgtttaataaaatttgc 46768627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 25 - 291
Target Start/End: Complemental strand, 11439919 - 11439652
Alignment:
Q  25 gactgagagttttactttgaggggtgtttttagaagggggtg-agtagtgacgatagatggt--tggatatcatttatacagtggtcattttcgtgaagg 121  Q
    ||||| |||||| | | ||||||||||||||    ||||||| |||||||||||||  ||||  |||||||||||| ||| |||||   |||||||||||    
T  11439919 gactgggagtttaattctgaggggtgtttttctttgggggtggagtagtgacgataagtggtgttggatatcatttttacggtggttgctttcgtgaagg 11439820  T
Q  122 agtctattttagatgatgatgcgtattttttgtgggtgttgtcctcaatgatgtttttagggtgtttattttcaggtgttccgcctatatacgacgcctt 221  Q
      ||| |||||| || ||| | |||||||  |||| ||||||| |||  |  | ||||||||||||||||||| | ||||||| ||||||| | ||||||    
T  11439819 gatctgttttaggtggtgacgtgtattttg-gtggatgttgtcttcagggg-gattttagggtgtttattttcggatgttccgtctatatatgtcgcctt 11439722  T
Q  222 ttgtttgtattctcagtttcaccggtctctgttcgtctttagcagggatttggttgtttaatagaatttg 291  Q
    ||||||||||||||| |||||||| ||| |||||||||| ||||| ||| ||||||||||||| ||||||    
T  11439721 ttgtttgtattctcattttcaccgatctttgttcgtcttgagcagagatctggttgtttaataaaatttg 11439652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 62 - 291
Target Start/End: Complemental strand, 31290880 - 31290653
Alignment:
Q  62 gggtgagtagtgacgatagatggttggatatcatttatacagtggtcattttcgtgaaggagtctattttagatgatgatgcgtattttttgtgggtgtt 161  Q
    ||||||||||||||||| ||||||||| |||||||| |||||||||| |||||| ||||||||||  ||||| || ||||| |||| |   |  ||  ||    
T  31290880 gggtgagtagtgacgatggatggttggctatcatttttacagtggtcgttttcgcgaaggagtctgatttaggtggtgatgtgtatatgaag--ggaatt 31290783  T
Q  162 gtcctcaatgatgtttttagggtgtttattttcaggtgttccgcctatatacgacgccttttgtttgtattctcagtttcaccggtctctgttcgtcttt 261  Q
    |||||||  | |||||||| ||||||||||||| ||||||||| ||| |||    |||| ||||||||||||||||| ||||| |||||||||||| ||     
T  31290782 gtcctcaggggtgtttttatggtgtttattttcgggtgttccgtctacatatagtgcctcttgtttgtattctcagtctcaccagtctctgttcgttttg 31290683  T
Q  262 agcagggatttggttgtttaatagaatttg 291  Q
    || |  ||| |||||||||||||| |||||    
T  31290682 agtaaagatctggttgtttaatagtatttg 31290653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 173 - 294
Target Start/End: Original strand, 4431006 - 4431127
Alignment:
Q  173 tgtttttagggtgtttattttcaggtgttcc-gcctatatacgacgccttttgtttgtattctcagtttcaccggtctctgttcgtctttagcagggatt 271  Q
    ||||||||||||||| ||||| ||||||||| |||| |||||| ||||||||||||||||||||| |||||||||||||| |||||||| ||||| |||     
T  4431006 tgtttttagggtgtt-atttttaggtgttcccgcctttatacggcgccttttgtttgtattctcaatttcaccggtctctattcgtcttgagcagagata 4431104  T
Q  272 tggttgtttaatagaatttgctg 294  Q
    || |||||||||| |||||||||    
T  4431105 tgtttgtttaataaaatttgctg 4431127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 60 - 294
Target Start/End: Original strand, 32882583 - 32882815
Alignment:
Q  60 gggggtgagtagtgacgatagatggt--tggatatcatttatacagtggtcattttcgtgaaggagtctattttagatgatgatgcgtattttttgtggg 157  Q
    ||||||||||||||||||| | ||||  |||||||| | | ||||||| || ||||||||||||||||  ||||||  | |||||  ||||||  |||||    
T  32882583 gggggtgagtagtgacgatgggtggtgttggatatcgtgtttacagtgctcgttttcgtgaaggagtcagttttaggcggtgatgtatattttg-gtggg 32882681  T
Q  158 tgttgtcctcaatgatgt-ttttagggtgtttattttcaggtgttccgcctatatacgacgccttttgtttgtattctcagtttcaccggtctctgttcg 256  Q
    ||||||||||   | ||| ||||||||||||||||||| ||||||| ||||||||||| ||||||| ||||||||| || | ||| | |   ||||||||    
T  32882682 tgttgtcctcgggggtgtcttttagggtgtttattttcgggtgttctgcctatatacggcgcctttagtttgtattttctgattc-cag---tctgttcg 32882777  T
Q  257 tctttagcagggatttggttgtttaatagaatttgctg 294  Q
    |||| ||||||||| || |||||||||| |||||||||    
T  32882778 tcttgagcagggatgtgattgtttaataaaatttgctg 32882815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 23 - 279
Target Start/End: Complemental strand, 10785359 - 10785105
Alignment:
Q  23 aggactgagagttttactttgaggggtgtttttagaagggggtgagtagtgacgatagatggttggatatcatttatacagtggtcattttcgtgaagga 122  Q
    ||||||||||||||   |||||||||||||| | |   ||| |||||||||||||| | |||||||||||| ||| | |||  ||| |||||||||||||    
T  10785359 aggactgagagtttatttttgaggggtgtttcttgc--gggatgagtagtgacgatgggtggttggatatcgttttttcagatgtcgttttcgtgaagga 10785262  T
Q  123 gtctattttagatgatgatgcgtattttttgtgggtgttgtcctcaatgatgttttt-agggtgtttattttcaggtgttccgcctatatacgacgcctt 221  Q
    |||| |||||  |||| |   |||||||   |||||||||||||||| | ||||||| | ||||||||| ||  ||||||||| || | |||| ||  ||    
T  10785261 gtctgttttaagtgataacatgtattttga-tgggtgttgtcctcaagggtgttttttaaggtgtttatatttgggtgttccgactttgtacggcgtttt 10785163  T
Q  222 ttgtttgtattctcagtttcaccggtctctgttcgtctttagcagggatttggttgtt 279  Q
    | ||||||||||||||||| ||| |||||| |||||||| ||||||||| ||||||||    
T  10785162 tagtttgtattctcagttttacccgtctctattcgtcttgagcagggatctggttgtt 10785105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 180 - 294
Target Start/End: Complemental strand, 376549 - 376436
Alignment:
Q  180 agggtgtttattttcaggtgttccgcctatatacgacgccttttgtttgtattctcagtttcaccggtctctgttcgtctttagcagggatttggttgtt 279  Q
    ||||||||||||||||||||||| ||||||||||| |||||||  ||||||||||| |||||| | ||||||||||||||| ||||||||  ||| || |    
T  376549 agggtgtttattttcaggtgttctgcctatatacggcgcctttactttgtattctctgtttcatccgtctctgttcgtcttgagcagggacgtgg-tggt 376451  T
Q  280 taatagaatttgctg 294  Q
    ||||| |||||||||    
T  376450 taataaaatttgctg 376436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 148 - 279
Target Start/End: Original strand, 52278589 - 52278717
Alignment:
Q  148 tttttgtgggtgttgtcctcaatgatgtttttagggtgtttattttcaggtgttccgcctatatacgacgccttttgtttgtattctcagtttcaccggt 247  Q
    |||| |||||||||||||||  || ||| |||| ||||||||||||||||||||||||||||||| | |||| || | |||||||||| |||||| | ||    
T  52278589 ttttggtgggtgttgtcctcg-tggtgtctttaaggtgtttattttcaggtgttccgcctatatatggcgcc-ttagcttgtattctctgtttca-cagt 52278685  T
Q  248 ctctgttcgtctttagcagggatttggttgtt 279  Q
    ||||||||||||| ||||||||| ||||||||    
T  52278686 ctctgttcgtcttgagcagggatctggttgtt 52278717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 217 - 294
Target Start/End: Complemental strand, 7451967 - 7451890
Alignment:
Q  217 gccttttgtttgtattctcagtttcaccggtctctgttcgtctttagcagggatttggttgtttaatagaatttgctg 294  Q
    |||| ||||||||||||||||||||||||||||||||||||||| ||||| ||| | |||||||||||  ||||||||    
T  7451967 gcctcttgtttgtattctcagtttcaccggtctctgttcgtcttgagcagagatctagttgtttaataatatttgctg 7451890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 176 - 291
Target Start/End: Original strand, 9557241 - 9557357
Alignment:
Q  176 ttttagggtgtttattttcaggtgttccgcctatatacgacgccttttgtttgtattctcagtttcaccggtctctg-ttcgtctttagcagggatttgg 274  Q
    ||||| ||||||||||||| |||||| ||  ||||||||| |  |||| ||||||||||||| |||||||||||||| |||||||| ||||| ||| |||    
T  9557241 ttttaaggtgtttattttcgggtgtttcgtttatatacgatgttttttatttgtattctcagattcaccggtctctgtttcgtcttgagcagagatctgg 9557340  T
Q  275 ttgtttaatagaatttg 291  Q
    |||||||| | ||||||    
T  9557341 ttgtttaacaaaatttg 9557357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 176 - 284
Target Start/End: Original strand, 27905766 - 27905873
Alignment:
Q  176 ttttagggtgtttattttcaggtgttccgcctatatacgacgccttttgtttgtattctcagtttcaccggtctctgttcgtctttagcagggatttggt 275  Q
    ||||| ||||||||||||  | |||||| |||||||||||||||| | ||||||| |||| | ||||||||||||| ||| |||| ||||||||| ||||    
T  27905766 ttttatggtgtttattttttg-tgttccacctatatacgacgcctctagtttgtagtctctgattcaccggtctctattcttcttgagcagggatctggt 27905864  T
Q  276 tgtttaata 284  Q
    |||||||||    
T  27905865 tgtttaata 27905873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 185 - 265
Target Start/End: Original strand, 37200485 - 37200565
Alignment:
Q  185 gtttattttcaggtgttccgcctatatacgacgccttttgtttgtattctcagtttcaccggtctctgttcgtctttagca 265  Q
    |||||||||| | |||||||||||||||||| | |||| |||||||||||| || ||||||||||||||||||||| ||||    
T  37200485 gtttattttcggatgttccgcctatatacgatgtctttagtttgtattctcggtatcaccggtctctgttcgtcttgagca 37200565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 182 - 244
Target Start/End: Complemental strand, 32863287 - 32863225
Alignment:
Q  182 ggtgtttattttcaggtgttccgcctatatacgacgccttttgtttgtattctcagtttcacc 244  Q
    ||||||||||||||||||||||||||||||||||| | ||| ||||||||||||| |||||||    
T  32863287 ggtgtttattttcaggtgttccgcctatatacgacacatttagtttgtattctcattttcacc 32863225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 187 - 276
Target Start/End: Original strand, 17033939 - 17034028
Alignment:
Q  187 ttattttcaggtgttccgcctatatacgacgccttttgtttgtattctcagtttcaccggtctctgttcgtctttagcagggatttggtt 276  Q
    |||||||| |||||||||| |||||||||||||||||||||||||| || |  |||||||||| ||||| |||| ||||  |||||||||    
T  17033939 ttattttcgggtgttccgcttatatacgacgccttttgtttgtattatctgaatcaccggtctatgttcatcttgagcatagatttggtt 17034028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 184 - 267
Target Start/End: Complemental strand, 41126190 - 41126107
Alignment:
Q  184 tgtttattttcaggtgttccgcctatatacgacgccttttgtttgtattctcagtttcaccggtctctgttcgtctttagcagg 267  Q
    ||||||||||| |||||||  ||||||||||| |||||| |||||||||||| |  ||| ||||||||||||||||| ||||||    
T  41126190 tgtttattttcgggtgttctacctatatacgatgcctttagtttgtattctctgaatcatcggtctctgttcgtcttgagcagg 41126107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 176 - 260
Target Start/End: Complemental strand, 38544463 - 38544379
Alignment:
Q  176 ttttagggtgtttattttcaggtgttccgcctatatacgacgccttttgtttgtattctcagtttcaccggtctctgttcgtctt 260  Q
    ||||| ||||||||||||| |||||||| | ||||||||||| |||| |||||||||||| |  |||| | ||| ||||||||||    
T  38544463 ttttatggtgtttattttcgggtgttccacatatatacgacgtctttagtttgtattctctgaatcacggatctttgttcgtctt 38544379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 186 - 270
Target Start/End: Original strand, 46603705 - 46603789
Alignment:
Q  186 tttattttcaggtgttccgcctatatacgacgccttttgtttgtattctcagtttcaccggtctctgttcgtctttagcagggat 270  Q
    ||||||||| |||||||||||||||||| ||| |||||||||||||| || |   ||||||||| | |||||||| || ||||||    
T  46603705 tttattttcgggtgttccgcctatatacaacgtcttttgtttgtattatctgaaccaccggtctttattcgtcttgagtagggat 46603789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 175 - 294
Target Start/End: Original strand, 49820488 - 49820608
Alignment:
Q  175 tttttagggtgtttattttcagg-tgttccgcctatatacgacgccttttgtttgtattctcagtttcaccggtctctgttcgtctttagcagggatttg 273  Q
    |||||| ||||||||||||| || ||||||||||| ||| |||| |||| |||||||||||| | ||||||| ||||| |  ||||| ||||| |||  |    
T  49820488 tttttatggtgtttattttccgggtgttccgcctacatatgacgtctttggtttgtattctctgattcaccgatctctatctgtcttgagcagagatcag 49820587  T
Q  274 gttgtttaatagaatttgctg 294  Q
     ||||| |||| |||||||||    
T  49820588 attgttaaataaaatttgctg 49820608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 182 - 294
Target Start/End: Complemental strand, 50589014 - 50588906
Alignment:
Q  182 ggtgtttatt-ttcaggtgttccgcctatatacgacgccttttgtttgtattctcagtttcaccggtctctgttcgtctttagcagggatttggttgttt 280  Q
    |||||||||| ||||||||||||||||||||||| ||||||| ||||||||     ||||||||| ||| | |||||||| ||||| ||| | ||| |||    
T  50589014 ggtgtttattcttcaggtgttccgcctatatacggcgcctttcgtttgtat----cgtttcaccgatctttattcgtcttgagcagagatctagtt-ttt 50588920  T
Q  281 aatagaatttgctg 294  Q
    |||| |||||||||    
T  50588919 aataaaatttgctg 50588906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 160 - 221
Target Start/End: Original strand, 16149093 - 16149155
Alignment:
Q  160 ttgtcctcaatgatgt-ttttagggtgtttattttcaggtgttccgcctatatacgacgcctt 221  Q
    |||||||||| | ||| |||||||||||||||||||  |||||||||||||||||| ||||||    
T  16149093 ttgtcctcaaggttgtcttttagggtgtttattttcgcgtgttccgcctatatacggcgcctt 16149155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 182 - 294
Target Start/End: Original strand, 19598990 - 19599101
Alignment:
Q  182 ggtgttta-ttttcaggtgttccgcctatatacgacgccttttgtttgtattctcagtttcaccggtctctgttcgtctttagcagggatttggttgttt 280  Q
    |||||||| ||||||||||||||||||||||||| ||||||||  |||||||| | |||| |   |||| |||||||||| ||||| ||| ||||| |||    
T  19598990 ggtgtttacttttcaggtgttccgcctatatacggcgcctttttattgtattc-ccgttttattagtctttgttcgtcttgagcagagatctggtt-ttt 19599087  T
Q  281 aatagaatttgctg 294  Q
    |||| | |||||||    
T  19599088 aataaattttgctg 19599101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 196 - 267
Target Start/End: Complemental strand, 26602550 - 26602479
Alignment:
Q  196 ggtgttccgcctatatacgacgccttttgtttgtattctcagtttcaccggtctctgttcgtctttagcagg 267  Q
    ||||||||| |||||||| || | |||||||||| ||||| |  ||||||||||||||| ||||| ||||||    
T  26602550 ggtgttccgtctatatacaacactttttgtttgttttctccgaatcaccggtctctgttggtcttgagcagg 26602479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 184 - 231
Target Start/End: Original strand, 42374526 - 42374573
Alignment:
Q  184 tgtttattttcaggtgttccgcctatatacgacgccttttgtttgtat 231  Q
    ||||||||||| ||||||||||||||||| | |||| |||||||||||    
T  42374526 tgtttattttcgggtgttccgcctatatatggcgccctttgtttgtat 42374573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 175 - 265
Target Start/End: Complemental strand, 38546931 - 38546841
Alignment:
Q  175 tttttagggtgtttattttcaggtgttccgcctatatacgacgccttttgtttgtattctcagtttcaccggtctctgttcgtctttagca 265  Q
    |||||| ||| ||||||||| | ||||||||||||||||||| | ||| ||||||| |||| |  |||| | ||| |||||||||| ||||    
T  38546931 tttttatggtttttattttcggatgttccgcctatatacgacacatttagtttgtactctctgaatcactgatctttgttcgtcttgagca 38546841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 64 - 142
Target Start/End: Original strand, 16577480 - 16577560
Alignment:
Q  64 gtgagtagtgacgatagatggtt--ggatatcatttatacagtggtcattttcgtgaaggagtctattttagatgatgatg 142  Q
    |||||||| ||||||  ||||||  ||||||||||| |  ||||||| |||||||||| |||||| |||||| ||||||||    
T  16577480 gtgagtagggacgatgaatggttatggatatcattttttgagtggtcgttttcgtgaaagagtctgttttaggtgatgatg 16577560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 182 - 214
Target Start/End: Original strand, 4652128 - 4652160
Alignment:
Q  182 ggtgtttattttcaggtgttccgcctatatacg 214  Q
    ||||||| |||||||||||||||||||||||||    
T  4652128 ggtgtttgttttcaggtgttccgcctatatacg 4652160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 184 - 232
Target Start/End: Complemental strand, 18845019 - 18844971
Alignment:
Q  184 tgtttattttcaggtgttccgcctatatacgacgccttttgtttgtatt 232  Q
    ||||||||||| | | ||||| ||||| |||||||||||||||||||||    
T  18845019 tgtttattttcggatattccgtctatacacgacgccttttgtttgtatt 18844971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 80; Significance: 3e-37; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 84 - 294
Target Start/End: Complemental strand, 17656575 - 17656365
Alignment:
Q  84 gttggatatcatttatacagtggtcatttt-cgtgaaggagtctattttagatgatgatgcgtattttttgtgggtgttgtcctcaatgatgtttttagg 182  Q
    |||||||||| ||| | |||||||| |||| | ||||||||||| ||||||||| ||| | | |||||  ||||||||||||||||| | ||||||||||    
T  17656575 gttggatatcgtttttgcagtggtcgtttttcttgaaggagtctgttttagatggtgacgtgaattttg-gtgggtgttgtcctcaagggtgtttttagg 17656477  T
Q  183 gtgtttattttcaggtgttccgcctatatacgacgccttttgtttgtattctcagtttcaccggtctctgttcgtctttagcagggatttggttgtttaa 282  Q
    ||||| |||||| ||||||||| |||||||||||||||||||||| |||  ||| |||||||||||||| ||  || | ||||||||  || ||||||||    
T  17656476 gtgttaattttcgggtgttccgtctatatacgacgccttttgtttatatgttcaatttcaccggtctctattgctcatgagcagggacctgattgtttaa 17656377  T
Q  283 tagaatttgctg 294  Q
    || |||||||||    
T  17656376 taaaatttgctg 17656365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 13 - 242
Target Start/End: Complemental strand, 10248477 - 10248246
Alignment:
Q  13 tttggtgttcaggactgagagttttactttgaggggtgtttt-tagaagggggtgagtagtgacgatagatg--gttggatatcatttatacagtggtca 109  Q
    ||||||||| |||||| ||||||| | ||||| ||||||||  | |  ||||||||||||||||||| | ||  || |||| || ||| ||||||||||     
T  10248477 tttggtgttgaggacttagagtttaattttgacgggtgtttcgttg--gggggtgagtagtgacgatgggtgttgtgggatgtcgtttttacagtggtcg 10248380  T
Q  110 ttttcgtgaaggagtctattttagatgatgatgcgtattttttgtgggtgttgtcctcaatgatgttttt-agggtgtttattttcagg-tgttccgcct 207  Q
    ||||||||||||||| | |||||| || ||| | |||||||  | ||||||||||||||| | ||||||| | ||||||| |||| ||| ||||||||||    
T  10248379 ttttcgtgaaggagtttgttttaggtggtgacgtgtattttg-gcgggtgttgtcctcaagggtgttttttaaggtgtttttttttagggtgttccgcct 10248281  T
Q  208 atatacgacgccttttgtttgtattctcagtttca 242  Q
    ||||||||||||||| | |||||||||||||||||    
T  10248280 atatacgacgcctttaggttgtattctcagtttca 10248246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 176 - 290
Target Start/End: Complemental strand, 12197822 - 12197708
Alignment:
Q  176 ttttagggtgtttattttcaggtgttccgcctatatacgacgccttttgtttgtattctcagtttcaccggtctctgttcgtctttagcagggatttggt 275  Q
    |||||||||||||||||||  |||||||||||||| ||||||||||| |||||||||||| | ||||||| ||||| |||||||| ||||  ||| | ||    
T  12197822 ttttagggtgtttattttcccgtgttccgcctatagacgacgcctttagtttgtattctctgattcaccgatctctattcgtcttgagcatagatctcgt 12197723  T
Q  276 tgtttaatagaattt 290  Q
    |||| |||| |||||    
T  12197722 tgttaaataaaattt 12197708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 176 - 290
Target Start/End: Complemental strand, 12442250 - 12442136
Alignment:
Q  176 ttttagggtgtttattttcaggtgttccgcctatatacgacgccttttgtttgtattctcagtttcaccggtctctgttcgtctttagcagggatttggt 275  Q
    |||||||||||||||||||  |||||||||||||| ||||||||||| |||||||||||| | ||||||| ||||| |||||||| ||||  ||| | ||    
T  12442250 ttttagggtgtttattttcccgtgttccgcctatagacgacgcctttagtttgtattctctgattcaccgatctctattcgtcttgagcatagatctcgt 12442151  T
Q  276 tgtttaatagaattt 290  Q
    |||| |||| |||||    
T  12442150 tgttaaataaaattt 12442136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 202 - 294
Target Start/End: Complemental strand, 8843833 - 8843743
Alignment:
Q  202 ccgcctatatacgacgccttttgtttgtattctcagtttcaccggtctctgttcgtctttagcagggatttggttgtttaatagaatttgctg 294  Q
    ||||||||||||| ||| ||| ||||||||| || |||||||||||||||||||||||| || ||||||||| || ||||||| |||||||||    
T  8843833 ccgcctatatacggcgcatttcgtttgtatt-tctgtttcaccggtctctgttcgtcttgagaagggatttgatt-tttaataaaatttgctg 8843743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 175 - 291
Target Start/End: Complemental strand, 8862370 - 8862256
Alignment:
Q  175 tttttagggtgtttattttcagg-tgttccgcctatatacgacgccttttgtttgtattctcagtttcaccggtctctgttcgtctttagcagggatttg 273  Q
    |||||| ||||||||||||  || ||||||| ||||||||| ||||||||||||||| |||||  ||||||| ||| |||||||||| || |||||| ||    
T  8862370 tttttatggtgtttatttttcggatgttccgtctatatacggcgccttttgtttgtactctca--ttcaccgatct-tgttcgtcttgagtagggatctg 8862274  T
Q  274 gttgtttaatagaatttg 291  Q
    |||| ||| || ||||||    
T  8862273 gttgcttagtaaaatttg 8862256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 196 - 291
Target Start/End: Complemental strand, 25184848 - 25184754
Alignment:
Q  196 ggtgttccgcctatatacgacgccttttgtttgtattctcagtttcaccggtctctgttcgtctttagcagggatttggttgtttaatagaatttg 291  Q
    |||||||| |||||||||||||  ||| ||||||| |||| |  |||||||||||| || ||||| || |||||||||||| ||||||| ||||||    
T  25184848 ggtgttccacctatatacgacgtttttagtttgtactctctgaatcaccggtctctttttgtcttgagtagggatttggtt-tttaataaaatttg 25184754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 175 - 214
Target Start/End: Complemental strand, 2273799 - 2273760
Alignment:
Q  175 tttttagggtgtttattttcaggtgttccgcctatatacg 214  Q
    ||||||||||||||||||||||||||||||| | ||||||    
T  2273799 tttttagggtgtttattttcaggtgttccgcttttatacg 2273760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 185 - 235
Target Start/End: Complemental strand, 9831741 - 9831691
Alignment:
Q  185 gtttattttcaggtgttccgcctatatacgacgccttttgtttgtattctc 235  Q
    |||||||||| |||| || |||||||||||||| |||| ||||||||||||    
T  9831741 gtttattttcgggtggtcggcctatatacgacgtctttagtttgtattctc 9831691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 198 - 266
Target Start/End: Complemental strand, 43312378 - 43312312
Alignment:
Q  198 tgttccgcctatatacgacgccttttgtttgtattctcagtttcaccggtctctgttcgtctttagcag 266  Q
    ||||||||||||||| | ||||||| ||  | ||||||||||||| |||||||| |||||||| |||||    
T  43312378 tgttccgcctatatatggcgcctttagt--gcattctcagtttcatcggtctctattcgtcttgagcag 43312312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 80; Significance: 3e-37; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 176 - 291
Target Start/End: Complemental strand, 20701544 - 20701430
Alignment:
Q  176 ttttagggtgtttattttcaggtgttccgcctatatacgacgccttttgtttgtattctcagtttcaccggtctctgttcgtctttagcagggatttggt 275  Q
    |||||| |||||||||| ||||||||||||||||||||  |||||||||||||||||||||||||||||| |||||||||||||| || |||||||||||    
T  20701544 ttttagtgtgtttatttccaggtgttccgcctatatacagcgccttttgtttgtattctcagtttcaccgatctctgttcgtcttgag-agggatttggt 20701446  T
Q  276 tgtttaatagaatttg 291  Q
    ||||||||| ||||||    
T  20701445 tgtttaataaaatttg 20701430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 173 - 291
Target Start/End: Complemental strand, 3880362 - 3880244
Alignment:
Q  173 tgtttttagggtgtttattttcaggtgttccgcctatatacgacgccttttgtttgtattctcagtttcaccggtctctgttcgtctttagcagggattt 272  Q
    |||||||||||||||||||||  |||||||||| ||||||||   ||||||||||||||| ||||||||||||||||||||||||||| ||||||||| |    
T  3880362 tgtttttagggtgtttattttttggtgttccgcttatatacggaaccttttgtttgtattttcagtttcaccggtctctgttcgtcttgagcagggatct 3880263  T
Q  273 ggttgtttaatagaatttg 291  Q
    | |||||||||| ||||||    
T  3880262 gattgtttaataaaatttg 3880244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 110 - 290
Target Start/End: Complemental strand, 15120415 - 15120235
Alignment:
Q  110 ttttcgtgaaggagtctattttagatgatgatgcgtattttttgtgggtgttgtcctcaatgatgttttt-agggtgtttattttcaggtgttccgccta 208  Q
    |||| ||||| |||||| |||||| || ||||| |||||||  |||| |||||||||||  ||||||||| |||||||||||| |||| ||||| |||||    
T  15120415 tttttgtgaatgagtctgttttaggtggtgatgtgtattttg-gtggatgttgtcctcatggatgttttttagggtgtttattgtcagatgttctgccta 15120317  T
Q  209 tatacgacgccttttgtttgtattctcagtttcaccggtctctgttcgtctttagcagggatttggttgtttaatagaattt 290  Q
     ||||| || |||| ||||||||||||||||| ||||||||||||| | ||| | |||||||  ||||||| |||| |||||    
T  15120316 catacgtcgtctttagtttgtattctcagttttaccggtctctgtttgacttgaccagggatccggttgttaaataaaattt 15120235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 148 - 293
Target Start/End: Original strand, 6860338 - 6860484
Alignment:
Q  148 tttttgtgggtgttgtcctcaatgatgtttttagggtgtttattttcaggtgttccgcc--tatatacgacgccttttgtttgtattctcagtttcaccg 245  Q
    |||||||||| ||||||| ||  | |||||||||||||||||||||  |||||||||||  |||||||| || |||||||||||||||| ||||||||||    
T  6860338 tttttgtggg-gttgtccgcataggtgtttttagggtgtttatttttgggtgttccgcccctatatacggcgtcttttgtttgtattcttagtttcaccg 6860436  T
Q  246 gtctctgttcgtctttagcagggatttggttgtttaatagaatttgct 293  Q
     ||| | ||| |||| ||||||||| | ||||||||||| ||| ||||    
T  6860437 atctatattcatcttgagcagggatctagttgtttaataaaatatgct 6860484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 184 - 292
Target Start/End: Complemental strand, 17278201 - 17278093
Alignment:
Q  184 tgtttattttcaggtgttccgcctatatacgacgccttttgtttgtattctcagtttcaccggtctctgttcgtctttagcagggatttggttgtttaat 283  Q
    ||||||||||| ||||||||||||||||||||||||||| | |||||||||| |  |||||||||||||||| |||| ||||| ||| ||||| || |||    
T  17278201 tgtttattttcgggtgttccgcctatatacgacgcctttagattgtattctctgaatcaccggtctctgttcatcttaagcagcgatctggtttttaaat 17278102  T
Q  284 agaatttgc 292  Q
    | |||||||    
T  17278101 aaaatttgc 17278093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 198 - 269
Target Start/End: Original strand, 13423718 - 13423789
Alignment:
Q  198 tgttccgcctatatacgacgccttttgtttgtattctcagtttcaccggtctctgttcgtctttagcaggga 269  Q
    ||||||||||||||||||||||||| | |||||||||||||||||  |||||||||||||||| || |||||    
T  13423718 tgttccgcctatatacgacgcctttagattgtattctcagtttcaaaggtctctgttcgtcttgaggaggga 13423789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 190 - 230
Target Start/End: Complemental strand, 26534464 - 26534424
Alignment:
Q  190 ttttcaggtgttccgcctatatacgacgccttttgtttgta 230  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  26534464 ttttcaggtgttccgcctatatacgacgccttttgtttgta 26534424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 13 - 113
Target Start/End: Complemental strand, 3880508 - 3880405
Alignment:
Q  13 tttggtgttcaggactgagagttttactttgaggggtgtttttaga-agggggtgagtagtgacgatagatg--gttggatatcatttatacagtggtca 109  Q
    ||||||||||| ||||  |||||| | ||||||||||||||||    ||||||||||||||||||| |||||  |||||||||| ||| || |||||||     
T  3880508 tttggtgttcaagacttggagtttaattttgaggggtgttttttcttagggggtgagtagtgacgacagatggtgttggatatcgtttttatagtggtcg 3880409  T
Q  110 tttt 113  Q
    ||||    
T  3880408 tttt 3880405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 182 - 290
Target Start/End: Original strand, 9224273 - 9224380
Alignment:
Q  182 ggtgtttattttcaggtgttccgcctatatacgacgccttttgtttgtattctcagtttcaccggtctctgttcgtctttagcagggatttggttgttta 281  Q
    ||||||||||||| ||||||||  ||||||||||| ||||||| ||||| | ||  | | ||| |||||||||||||||   ||||||||| ||| ||||    
T  9224273 ggtgtttattttcgggtgttccttctatatacgacaccttttggttgtactttctttattaccagtctctgttcgtcttgtacagggatttagtt-ttta 9224371  T
Q  282 atagaattt 290  Q
    ||| |||||    
T  9224372 ataaaattt 9224380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0063 (Bit Score: 65; Significance: 2e-28; HSPs: 1)
Name: scaffold0063
Description:

Target: scaffold0063; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 13 - 270
Target Start/End: Original strand, 58298 - 58556
Alignment:
Q  13 tttggtgttcaggactgagagttttactttgaggggtgtttttagaagggggtgagtagtgacgatagatggt--tggatatcatttatacagtggtcat 110  Q
    |||||||||| ||||||||||||| | ||||||| ||||| ||    ||| ||||||||||||||  | | ||  ||||||||| || |||| ||||| |    
T  58298 tttggtgttcgggactgagagtttaattttgaggagtgttgttctttgggtgtgagtagtgacgacgggtagtgttggatatcagttttacaatggtcgt 58397  T
Q  111 tttcgtgaaggagtctattttagatgatgatgcgtattttttgtgggtgttgtcctcaatgatgtttttagggtgtttattttcaggtgttccgcctata 210  Q
    |||||||||||||||| |||| | || ||||| ||| |||   ||  || ||| ||||  | |||||||||||| ||||||||  |||||||  ||||||    
T  58398 tttcgtgaaggagtctgtttttggtggtgatgtgtactttggctga-tggtgttctcatgggtgtttttagggtatttatttttgggtgttctacctata 58496  T
Q  211 tacgacgccttttgtttgtattctcagtttcaccggtctctgttcgtctttagcagggat 270  Q
    |||| |||||||||||| |||| || ||||||||||||||| |||||||| |||||||||    
T  58497 tacggcgccttttgtttctattatctgtttcaccggtctcttttcgtcttgagcagggat 58556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0119 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 1)
Name: scaffold0119
Description:

Target: scaffold0119; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 181 - 291
Target Start/End: Complemental strand, 41911 - 41802
Alignment:
Q  181 gggtgtttattttcaggtgttccgcctatatacgacgccttttgtttgtattctcagtttcaccggtctctgttcgtctttagcagggatttggttgttt 280  Q
    ||||||||||| |  |||||| ||||| | ||||||||||||  |||||||||||| ||||||||| |||| |||||||| | ||| |||||| |||||     
T  41911 gggtgtttattcttgggtgtttcgcctttgtacgacgcctttaatttgtattctcaatttcaccggcctct-ttcgtcttgaacagagatttgattgtta 41813  T
Q  281 aatagaatttg 291  Q
    |||| ||||||    
T  41812 aataaaatttg 41802  T

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Target: scaffold1613 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold1613
Description:

Target: scaffold1613; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 176 - 260
Target Start/End: Complemental strand, 742 - 658
Alignment:
Q  176 ttttagggtgtttattttcaggtgttccgcctatatacgacgccttttgtttgtattctcagtttcaccggtctctgttcgtctt 260  Q
    ||||| ||||||||||||| |||||||| | ||||||||||| |||| |||||||||||| |  |||| | ||| ||||||||||    
T  742 ttttatggtgtttattttcgggtgttccacatatatacgacgtctttagtttgtattctctgaatcacggatctttgttcgtctt 658  T

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Target: scaffold1384 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold1384
Description:

Target: scaffold1384; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 84 - 227
Target Start/End: Complemental strand, 1494 - 1347
Alignment:
Q  84 gttggatatcatttatacagtggtcattttcgtgaaggagtctattttagatgatgatgcgtattttttgtgggt---gttgtcctcaatgatgttttt- 179  Q
    |||||||||| ||| |||||||||  || ||||| |||||||  |||||| || ||| | |||||||| ||||||   |||||||| |  | |||||||     
T  1494 gttggatatcgtttttacagtggttgttctcgtgtaggagtcagttttaggtggtgacgtgtattttt-gtgggttttgttgtccttaggggtgtttttt 1396  T
Q  180 agggtgtttatttt-caggtgttccgcctatatacgacgccttttgttt 227  Q
    | |||||||||||| | ||||||| ||||||||||| ||||||||||||    
T  1395 atggtgtttatttttcgggtgttctgcctatatacggcgccttttgttt 1347  T

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Target: scaffold1252 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold1252
Description:

Target: scaffold1252; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 197 - 255
Target Start/End: Original strand, 816 - 874
Alignment:
Q  197 gtgttccgcctatatacgacgccttttgtttgtattctcagtttcaccggtctctgttc 255  Q
    |||||||||||| ||||  ||||||  |||||||||||| ||||||||||| |||||||    
T  816 gtgttccgcctaaatacagcgccttccgtttgtattctctgtttcaccggtttctgttc 874  T

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Target: scaffold0499 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0499
Description:

Target: scaffold0499; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 196 - 260
Target Start/End: Original strand, 6906 - 6970
Alignment:
Q  196 ggtgttccgcctatatacgacgccttttgtttgtattctcagtttcaccggtctctgttcgtctt 260  Q
    ||||||||||| ||||||| |||||||  |||||| | || |||||| |||||| ||||||||||    
T  6906 ggtgttccgccaatatacggcgcctttcttttgtaatatctgtttcatcggtctttgttcgtctt 6970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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