View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9703_low_51 (Length: 246)
Name: NF9703_low_51
Description: NF9703
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9703_low_51 |
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Alignment Details
Target: chr2 (Bit Score: 135; Significance: 2e-70; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 1 - 236
Target Start/End: Complemental strand, 35102905 - 35102670
Alignment:
| Q |
1 |
tatttgaaaaggatggatttgagcaactccaagtatcttatagagactccaaagnnnnnnncagccccaaaacttgagcggctagattttaccggataca |
100 |
Q |
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|||||||||||||||||||||||||||||||||| ||||| ||||||||||||| |||||| |||||||||||||||||||||||||| || |
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| T |
35102905 |
tatttgaaaaggatggatttgagcaactccaagtttcttacagagactccaaagtttttctggaccccaatacttgagcggctagattttaccggatgca |
35102806 |
T |
|
| Q |
101 |
caaagttaataaatgtccatccatcaattggacatcttacagaacttgctttcttaagtttgcaaaactgcagcagtttgatcaaccttgattttggtag |
200 |
Q |
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|||| |||||| | || ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||| |||||||||| |
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| T |
35102805 |
caaacttaatacaggttcatccatcaattggacatcttacagaacttgttttcttaagtttgcaaaactgcagcagtttggtcaacctcgattttggtat |
35102706 |
T |
|
| Q |
201 |
cgtaccaattttaagttctttgagagttctacgcct |
236 |
Q |
| |
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||| ||| |||| ||||||||||||||||||||| |
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| T |
35102705 |
tgtatcaaatttatattctttgagagttctacgcct |
35102670 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 134; E-Value: 7e-70
Query Start/End: Original strand, 1 - 239
Target Start/End: Complemental strand, 35042825 - 35042587
Alignment:
| Q |
1 |
tatttgaaaaggatggatttgagcaactccaagtatcttatagagactccaaagnnnnnnncagccccaaaacttgagcggctagattttaccggataca |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||| |||| || |
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| T |
35042825 |
tatttgaaaaggatggatttgagcaactccaagtatcttatagagactccaaagtttttttggaccccaaaacttgagcgactagattttacgggatgca |
35042726 |
T |
|
| Q |
101 |
caaagttaataaatgtccatccatcaattggacatcttacagaacttgctttcttaagtttgcaaaactgcagcagtttgatcaaccttgattttggtag |
200 |
Q |
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|||| |||||| |||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| | ||||||| || ||||| |
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| T |
35042725 |
caaacttaatacatgtccattcatcaattggacatcttacagaacttgttttcttaagtttgcaaaactgcagcagtttggttgaccttgacttcggtag |
35042626 |
T |
|
| Q |
201 |
cgtaccaattttaagttctttgagagttctacgcctttg |
239 |
Q |
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||| ||| |||||||||||| ||||||||||||||| |
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| T |
35042625 |
tgtatcaaatttaagttctttccaagttctacgcctttg |
35042587 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 3 - 195
Target Start/End: Original strand, 35128342 - 35128534
Alignment:
| Q |
3 |
tttgaaaaggatggatttgagcaactccaagtatcttatagagactccaaagnnnnnnncagccccaaaacttgagcggctagattttaccggatacaca |
102 |
Q |
| |
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|||||||||||||||||||| ||||||||||||||||||||||| |||| || ||||||||||| ||||| ||||||||| |||| |||| |
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| T |
35128342 |
tttgaaaaggatggatttgatcaactccaagtatcttatagagagtccatagtttttttttaccccaaaactttagcggttagattttattggatgcaca |
35128441 |
T |
|
| Q |
103 |
aagttaataaatgtccatccatcaattggacatcttacagaacttgctttcttaagtttgcaaaactgcagcagtttgatcaaccttgatttt |
195 |
Q |
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| T |
35128442 |
aacttaatacaggtccatccagcaattggacatcttacagaacttgttttcttaaatttacaaaacagcagcagtttggtcgacctcgatttt |
35128534 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 138 - 236
Target Start/End: Complemental strand, 35095482 - 35095384
Alignment:
| Q |
138 |
tacagaacttgctttcttaagtttgcaaaactgcagcagtttgatcaaccttgattttggtagcgtaccaattttaagttctttgagagttctacgcct |
236 |
Q |
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|||| |||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||| ||| ||| |||| |||||||||||||||||||||| |
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| T |
35095482 |
tacaaaacttgttttcttaagtttgcaaaactgcagcagtttggtcaaccttgattttggtagtgtatcaaatttatgttctttgagagttctacgcct |
35095384 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 113 - 162
Target Start/End: Complemental strand, 35051909 - 35051860
Alignment:
| Q |
113 |
atgtccatccatcaattggacatcttacagaacttgctttcttaagtttg |
162 |
Q |
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||||||||||||| ||||||| ||| | ||||||||||||||| |||||| |
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| T |
35051909 |
atgtccatccatccattggacttctaaaagaacttgctttcttgagtttg |
35051860 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.00000008; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 73 - 170
Target Start/End: Original strand, 25448213 - 25448310
Alignment:
| Q |
73 |
cttgagcggctagattttaccggatacacaaagttaataaatgtccatccatcaattggacatcttacagaacttgctttcttaagtttgcaaaactg |
170 |
Q |
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||||||||||||||| |||| |||| || || ||| | |||| ||||||||||||||| |||| |||||||| ||||| |||||||||||||| |
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| T |
25448213 |
cttgagcggctagatcttacaggatgcattaacttatcacatgtggatccatcaattggacttcttgaagaacttgtattcttgagtttgcaaaactg |
25448310 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 122 - 170
Target Start/End: Complemental strand, 25433181 - 25433133
Alignment:
| Q |
122 |
catcaattggacatcttacagaacttgctttcttaagtttgcaaaactg |
170 |
Q |
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|||||||||||| ||||||| |||||| ||||| |||||||||||||| |
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| T |
25433181 |
catcaattggacttcttacaaaacttgtattcttgagtttgcaaaactg |
25433133 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 73 - 161
Target Start/End: Original strand, 25488138 - 25488226
Alignment:
| Q |
73 |
cttgagcggctagattttaccggatacacaaagttaataaatgtccatccatcaattggacatcttacagaacttgctttcttaagttt |
161 |
Q |
| |
|
|||||||||||||||||||| |||| || ||| ||| |||| ||||||||||||||| |||||| ||||||| ||||| ||||| |
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| T |
25488138 |
cttgagcggctagattttacaggatgcataaacttatcgcatgtggatccatcaattggacttcttactgaacttgtattcttgagttt |
25488226 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 29
Target Start/End: Original strand, 25640897 - 25640925
Alignment:
| Q |
1 |
tatttgaaaaggatggatttgagcaactc |
29 |
Q |
| |
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||||||||||||||||||||||||||||| |
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|
| T |
25640897 |
tatttgaaaaggatggatttgagcaactc |
25640925 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 73 - 170
Target Start/End: Complemental strand, 496996 - 496899
Alignment:
| Q |
73 |
cttgagcggctagattttaccggatacacaaagttaataaatgtccatccatcaattggacatcttacagaacttgctttcttaagtttgcaaaactg |
170 |
Q |
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||||||||| |||||||||| |||| || ||| || | | || ||||||||| |||||| |||||||||||||| ||||| |||||||| ||||| |
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| T |
496996 |
cttgagcggatagattttacaggatgcataaacttgttgcaggtgcatccatcagttggacttcttacagaacttgtattcttgagtttgcagaactg |
496899 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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