View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9703_low_52 (Length: 245)
Name: NF9703_low_52
Description: NF9703
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9703_low_52 |
 | |
|
| [»] chr5 (3 HSPs) |
| |
|
Alignment Details
Target: chr5 (Bit Score: 213; Significance: 1e-117; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 5 - 245
Target Start/End: Complemental strand, 6814477 - 6814237
Alignment:
| Q |
5 |
gtgttgattcatggatcttgccatggggcatggtgttggtacaaggttgttactttgttaaaatctgctggacacgatgtcacagcactagacatggctg |
104 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| || || || |||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
6814477 |
gtgttgattcatggatcttgccatggggcatggtgttggtacaagattattgctctgttaaaatctgctggacacgaagtcacagcactagacatggctg |
6814378 |
T |
|
| Q |
105 |
cttctggaatccatccaaagcaagtgcatgagctggattctgtcacagattattgtgaaccgttgattgaatttctaaggtcactgccacaagatgagag |
204 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
6814377 |
cttctggaatccatccaaagcaagtgcatgagctggattctgtcacagattattatgaaccgttgattgaatttctaaggtcactgccacaagatcagag |
6814278 |
T |
|
| Q |
205 |
agttattctagtgggtcatagcttgggtgggatgtgtatat |
245 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6814277 |
agttattctagtgggtcatagcttgggtgggatgtgtatat |
6814237 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 5 - 245
Target Start/End: Complemental strand, 6807692 - 6807452
Alignment:
| Q |
5 |
gtgttgattcatggatcttgccatggggcatggtgttggtacaaggttgttactttgttaaaatctgctggacacgatgtcacagcactagacatggctg |
104 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| || || || |||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
6807692 |
gtgttgattcatggatcttgccatggggcatggtgttggtacaagattattgctctgttaaaatctgctggacacgaagtcacagcactagacatggctg |
6807593 |
T |
|
| Q |
105 |
cttctggaatccatccaaagcaagtgcatgagctggattctgtcacagattattgtgaaccgttgattgaatttctaaggtcactgccacaagatgagag |
204 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||| ||||||| |||| |
|
|
| T |
6807592 |
cttctggaatccatccaaagcaagtgcatgagctggattctgtcacatattattatgaaccgttgattgaatttctaaggtcactgcgacaagatcagag |
6807493 |
T |
|
| Q |
205 |
agttattctagtgggtcatagcttgggtgggatgtgtatat |
245 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6807492 |
agttattctagtgggtcatagcttgggtgggatgtgtatat |
6807452 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 5 - 245
Target Start/End: Complemental strand, 6823674 - 6823434
Alignment:
| Q |
5 |
gtgttgattcatggatcttgccatggggcatggtgttggtacaaggttgttactttgttaaaatctgctggacacgatgtcacagcactagacatggctg |
104 |
Q |
| |
|
|||||| |||||||| ||||||||||||||||||||||||||||| | ||||| |||||||||||||||||||||| |||||| ||||||||||||||| |
|
|
| T |
6823674 |
gtgttggttcatggagcttgccatggggcatggtgttggtacaagataattactctgttaaaatctgctggacacgaagtcacatcactagacatggctg |
6823575 |
T |
|
| Q |
105 |
cttctggaatccatccaaagcaagtgcatgagctggattctgtcacagattattgtgaaccgttgattgaatttctaaggtcactgccacaagatgagag |
204 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
6823574 |
cttctggaatccatccaaagcaagtgcatgagctggattctgtcacagattattatgaaccgttgattgaatttctaaggtcactgccacaagatcagag |
6823475 |
T |
|
| Q |
205 |
agttattctagtgggtcatagcttgggtgggatgtgtatat |
245 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
6823474 |
agttattctagtgggtcatagcttaggtgggatgtgtatat |
6823434 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 25 - 126
Target Start/End: Complemental strand, 1769024 - 1768923
Alignment:
| Q |
25 |
ccatggggcatggtgttggtacaaggttgttactttgttaaaatctgctggacacgatgtcacagcactagacatggctgcttctggaatccatccaaag |
124 |
Q |
| |
|
|||||| |||||||||||||| ||||||| ||| ||||||| ||||| || | ||||||||||||||||||||||||| ||| | | |||||||| |
|
|
| T |
1769024 |
ccatggtgcatggtgttggtataaggttgcaactgatctaaaatcagctggtcataaagtcacagcactagacatggctgcttgtggtaccaatccaaag |
1768925 |
T |
|
| Q |
125 |
ca |
126 |
Q |
| |
|
|| |
|
|
| T |
1768924 |
ca |
1768923 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University