View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9703_low_54 (Length: 244)
Name: NF9703_low_54
Description: NF9703
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9703_low_54 |
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| [»] scaffold0175 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 143; Significance: 3e-75; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 44 - 224
Target Start/End: Complemental strand, 29276273 - 29276096
Alignment:
| Q |
44 |
tgcaatagtatcatattcctaaaggaagagcttgaaatataattaatggatcatcacaagactttatacggtatagacatgtcccatcttatattgatat |
143 |
Q |
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| T |
29276273 |
tgcaatagtatcatattcctaagggaagagcttgaaatatat---atggatcatcacaagactttatacggtatagacatgtcccatcttatattgatat |
29276177 |
T |
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| Q |
144 |
attattggagaaattaggtgtgattgggaagaaacatgtatagaaatactgaatcaataatgaaggagagatgtgactttg |
224 |
Q |
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| T |
29276176 |
attattggagaaattgggtgtgattgggcagaaacatgtataggaatactgaatcaatgatgaaggagagatgtgactttg |
29276096 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 7 - 47
Target Start/End: Complemental strand, 29276349 - 29276309
Alignment:
| Q |
7 |
aagaagacatctttcgttagtaaaaagaagagtaaaatgca |
47 |
Q |
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| T |
29276349 |
aagaaggcatatttctttagtaaaaagaagagtaaaatgca |
29276309 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 135; Significance: 2e-70; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 44 - 224
Target Start/End: Original strand, 55858319 - 55858496
Alignment:
| Q |
44 |
tgcaatagtatcatattcctaaaggaagagcttgaaatataattaatggatcatcacaagactttatacggtatagacatgtcccatcttatattgatat |
143 |
Q |
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| T |
55858319 |
tgcaatagtatcatattcctaaggtaagagcttgaaatatat---atggatcatcacaagactttatacggtatagacatgtcccatcttatattgatat |
55858415 |
T |
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| Q |
144 |
attattggagaaattaggtgtgattgggaagaaacatgtatagaaatactgaatcaataatgaaggagagatgtgactttg |
224 |
Q |
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| T |
55858416 |
attattgaagaaattgggtgtgattgggcagaaacatgtataggaatactgaatcaatgatgaaggagagatgtgactttg |
55858496 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 103; Significance: 2e-51; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 69 - 226
Target Start/End: Original strand, 31502728 - 31502884
Alignment:
| Q |
69 |
aagagcttgaaatataattaatggatcatcaca--agactttatacggtatagacatgtcccatcttatattgatatattattggagaaattaggtgtga |
166 |
Q |
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| T |
31502728 |
aagagcttgaaatatat---atggatcatcacacaagactttatacggtgtagacatgtcccatcctatattgatatattattggagaaattaggtttga |
31502824 |
T |
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| Q |
167 |
ttgggaagaaacatgtatagaaatactgaatcaataatgaaggagagatgtgactttgat |
226 |
Q |
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| T |
31502825 |
ttgggcagaaacatgtataggaatactgaatcaatgatgaaggagagatgggactttgat |
31502884 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 18 - 47
Target Start/End: Original strand, 31502648 - 31502677
Alignment:
| Q |
18 |
tttcgttagtaaaaagaagagtaaaatgca |
47 |
Q |
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| T |
31502648 |
tttcgttagtaaaaagaagagtaaaatgca |
31502677 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0175 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: scaffold0175
Description:
Target: scaffold0175; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 27895 - 27941
Alignment:
| Q |
1 |
attggaaagaagacatctttcgttagtaaaaagaagagtaaaatgca |
47 |
Q |
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| T |
27895 |
attggaaagaaggcatatttcgttagtaaaaagaagagtaaaatgca |
27941 |
T |
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