View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9703_low_58 (Length: 241)
Name: NF9703_low_58
Description: NF9703
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9703_low_58 |
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| [»] chr6 (2 HSPs) |
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| [»] scaffold0012 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 206; Significance: 1e-113; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 18 - 239
Target Start/End: Original strand, 13717797 - 13718018
Alignment:
| Q |
18 |
agaatcactggaatatactggaaaacgcagtaggttattgcttcaaaagatataattcaaattttagaagaaaatgcggtgagtactaagtagtaataat |
117 |
Q |
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| T |
13717797 |
agaatcactggaatatactggaaaacgcagtaggttatggcttcaaaagatataattcaaattttaaaagaaaatgcggtgagtactaagtagtaataat |
13717896 |
T |
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| Q |
118 |
atggtttggcttttcatctttaacttagattaatgttactaatgttcacgtaaccttttttccccattgtcaatatgttaatttctctaaataggagtgt |
217 |
Q |
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| T |
13717897 |
atggtttggcttttcatctttaacttagattaatgttactaatgttcacgttatcttttttccccattgtcaatatgttaatttctctaaataggagtgt |
13717996 |
T |
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| Q |
218 |
tgaagttctaacatatgtacat |
239 |
Q |
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| T |
13717997 |
tgaagttctaacatatgtacat |
13718018 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 70; Significance: 1e-31; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 18 - 241
Target Start/End: Original strand, 29469809 - 29470028
Alignment:
| Q |
18 |
agaatcactggaatatactggaaaacgcagtaggttattg-cttcaaaagatataattcaaattttagaagaaaatgcggtgagtactaagtagtaataa |
116 |
Q |
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| T |
29469809 |
agaatcacctgaagatcctggaaaacgcagtaggttatggtcctctaaagatataattcaagttttagaagaaaatacggtgagtaata-gtgatatgaa |
29469907 |
T |
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| Q |
117 |
tatggtttggcttttcatctttaacttagattaatgttactaatgttcacgtaaccttttttccccattgtcaatatgttaatttctctaaataggagtg |
216 |
Q |
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| T |
29469908 |
t--ggtttgtcttttcatctttaagtttgattaatgttactaatgctcacttaacc-ctttcccccatt-acaatatgtcaaattctataaataggtgag |
29470003 |
T |
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| Q |
217 |
ttgaagttctaacatatgtacatgt |
241 |
Q |
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| T |
29470004 |
ttgaagtactaacatatgtacatgt |
29470028 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 35 - 102
Target Start/End: Complemental strand, 29673577 - 29673509
Alignment:
| Q |
35 |
ctggaaaacgcagtaggttattgctt-caaaagatataattcaaattttagaagaaaatgcggtgagta |
102 |
Q |
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| T |
29673577 |
ctggaaaacgtagtaggttatggttttccgaagatataattcaagttttagaagaaaatacagtgagta |
29673509 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0012 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: scaffold0012
Description:
Target: scaffold0012; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 36 - 102
Target Start/End: Complemental strand, 238431 - 238364
Alignment:
| Q |
36 |
tggaaaacgcagtaggttattg-cttcaaaagatataattcaaattttagaagaaaatgcggtgagta |
102 |
Q |
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| T |
238431 |
tggaaaacgcagtaggttatggtcctctaaagatataattcaagttttagaagaaaatacggtgagta |
238364 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 18 - 102
Target Start/End: Original strand, 12590338 - 12590423
Alignment:
| Q |
18 |
agaatcactggaatatactggaaaacgcagtaggttattg-cttcaaaagatataattcaaattttagaagaaaatgcggtgagta |
102 |
Q |
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| T |
12590338 |
agaatcaccggaaaatcctggaaaacgtagtaggttatggtcctctaaagatttaattcaagttttagaagaaaatactgtgagta |
12590423 |
T |
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