View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9703_low_59 (Length: 241)

Name: NF9703_low_59
Description: NF9703
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9703_low_59
NF9703_low_59
[»] chr8 (2 HSPs)
chr8 (1-224)||(25886189-25886412)
chr8 (5-224)||(44350037-44350256)
[»] chr2 (3 HSPs)
chr2 (1-208)||(14305116-14305323)
chr2 (1-212)||(14321507-14321718)
chr2 (2-212)||(14283359-14283569)


Alignment Details
Target: chr8 (Bit Score: 220; Significance: 1e-121; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 25886189 - 25886412
Alignment:
Q  1 tagtgataaagggtgtttggaagatttgaactttttctcatgtaacattagaatcacaatcacaatgttgactactgcttgaaacaaccgaaaaggtgct 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25886189 tagtgataaagggtgtttggaagatttgaactttttctcatgtaacattagaatcacaatcacaatgttgactactgcttgaaacaaccgaaaaggtgct 25886288  T
Q  101 tctatttgtttccatgaagaaaggttattggtttgagtaaaagccaagattcctagaacagtgtaagttatagccaaaagggtagttaccaacaagggta 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  25886289 tctatttgtttccatgaagaaaggttattggtttgagtaaaagccaagattcctagaacagtgtaagttatagccaaaagggtagttaccaacaaggtta 25886388  T
Q  201 gcttgaaccaaagagtgactctat 224  Q
    ||||||||||||||||||||||||    
T  25886389 gcttgaaccaaagagtgactctat 25886412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 5 - 224
Target Start/End: Original strand, 44350037 - 44350256
Alignment:
Q  5 gataaagggtgtttggaagatttgaactttttctcatgtaacattagaatcacaatcacaatgttgactactgcttgaaacaaccgaaaaggtgcttcta 104  Q
    ||||||||||||||||||||||||||||||| ||| ||||||||||||||||| || || ||||||||||| ||||||||||||||||||||||||||||    
T  44350037 gataaagggtgtttggaagatttgaacttttcctcgtgtaacattagaatcactattactatgttgactacagcttgaaacaaccgaaaaggtgcttcta 44350136  T
Q  105 tttgtttccatgaagaaaggttattggtttgagtaaaagccaagattcctagaacagtgtaagttatagccaaaagggtagttaccaacaagggtagctt 204  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||| ||||||||||||||||||||| ||    
T  44350137 tttgtttccatgaagaaaggttattggtttgagtaaaagccaatattcctagaacagtttaagttatagccaaaatggtagttaccaacaagggtagttt 44350236  T
Q  205 gaaccaaagagtgactctat 224  Q
    ||||||||||||||||||||    
T  44350237 gaaccaaagagtgactctat 44350256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 164; Significance: 9e-88; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 164; E-Value: 9e-88
Query Start/End: Original strand, 1 - 208
Target Start/End: Original strand, 14305116 - 14305323
Alignment:
Q  1 tagtgataaagggtgtttggaagatttgaactttttctcatgtaacattagaatcacaatcacaatgttgactactgcttgaaacaaccgaaaaggtgct 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || || ||||||  || ||||||||||||||||||| |||||    
T  14305116 tagtgataaagggtgtttggaagatttgaactttttctcatgtaacattagaatcactataactatgttggttattgcttgaaacaaccgaaaaagtgct 14305215  T
Q  101 tctatttgtttccatgaagaaaggttattggtttgagtaaaagccaagattcctagaacagtgtaagttatagccaaaagggtagttaccaacaagggta 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||| ||    
T  14305216 tctatttgtttccatgaagaaaggttattggtttgagtaaaagccaagattcctagaacagtgtaacttatagccaaaagggtagttaccaaaaaggcta 14305315  T
Q  201 gcttgaac 208  Q
    | ||||||    
T  14305316 gtttgaac 14305323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 1 - 212
Target Start/End: Original strand, 14321507 - 14321718
Alignment:
Q  1 tagtgataaagggtgtttggaagatttgaactttttctcatgtaacattagaatcacaatcacaatgttgactactgcttgaaacaaccgaaaaggtgct 100  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||| ||||| ||||| ||||||  || ||||||||||||||||||| |||||    
T  14321507 tagtgataaagggtgtttggaagatttgaactttttctcatgtaccattagtatcactatcactatgttggttattgcttgaaacaaccgaaaaagtgct 14321606  T
Q  101 tctatttgtttccatgaagaaaggttattggtttgagtaaaagccaagattcctagaacagtgtaagttatagccaaaagggtagttaccaacaagggta 200  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||| ||    
T  14321607 tctatttgtttccatgaagaaagtttattggtttgagtaaaagccaagattcctagaacagtgtaacttatagccaaaagggtagttaccaaaaaggcta 14321706  T
Q  201 gcttgaaccaaa 212  Q
    | ||||||||||    
T  14321707 gtttgaaccaaa 14321718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 139; E-Value: 7e-73
Query Start/End: Original strand, 2 - 212
Target Start/End: Original strand, 14283359 - 14283569
Alignment:
Q  2 agtgataaagggtgtttggaagatttgaactttttctcatgtaacattagaatcacaatcacaatgttgactactgcttgaaacaaccgaaaaggtgctt 101  Q
    |||| |||||||||| |||||| ||| |||||| ||||||||| |||||||||||| || || ||||||  || ||||||||||||||||||| ||||||    
T  14283359 agtggtaaagggtgtgtggaagctttcaactttatctcatgtaccattagaatcactatgactatgttggttattgcttgaaacaaccgaaaaagtgctt 14283458  T
Q  102 ctatttgtttccatgaagaaaggttattggtttgagtaaaagccaagattcctagaacagtgtaagttatagccaaaagggtagttaccaacaagggtag 201  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||| |||| |||    
T  14283459 ctatttgtttccatgaagaaaggttattggtttgagtaaaagccaagattcctagaacagtgtaacttatagccaaaagggtagttaacaaaaaggctag 14283558  T
Q  202 cttgaaccaaa 212  Q
     ||||||||||    
T  14283559 tttgaaccaaa 14283569  T

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