View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9703_low_6 (Length: 526)
Name: NF9703_low_6
Description: NF9703
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9703_low_6 |
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Alignment Details
Target: chr2 (Bit Score: 480; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 480; E-Value: 0
Query Start/End: Original strand, 18 - 517
Target Start/End: Complemental strand, 45379690 - 45379191
Alignment:
| Q |
18 |
atatactcataaaccaaaaccctcttattcttttcaacacaatagcccaaaagggtcaccagaaaaggtgatctcaaccctccaagaatctgcaactcat |
117 |
Q |
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| T |
45379690 |
atatactcataaaccaaaaccctcttattcttttcaacacaatagcccaaaagggtcaccagaaaaggtgatctcaaccctccaagaatctgcaactcat |
45379591 |
T |
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| Q |
118 |
tttgaaactctctctctgattgcaaagacaaagagtccaaccttttgatggcaatgaattttccatctttaagtactcccttgaaaacagtaccagaacc |
217 |
Q |
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| T |
45379590 |
tttgaaactctctctctgattgcaaagacaaagagtccaaccttttgatggcaatgaattttccatctttcagtactcccttgaaaacagtaccagaacc |
45379491 |
T |
|
| Q |
218 |
acctttgccaattatattagcagtgtcaaaaacattggtagcaacctttagctctttgtaagaaaatctttgtagcttcaaaggagcacttgcatcaaaa |
317 |
Q |
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| T |
45379490 |
acctttgccaattatattagcagtgtcaaaaacattggtagcaacctttaactctttgtaagaaaatctttgtagcttcaaaggagaacttgcatcaaaa |
45379391 |
T |
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| Q |
318 |
ggaatggtcttagctctatgtacaagagaatgccaaagatgataaaggaagtaaagtattgagaagaagatgacaacagaagctgaaatggttagtgcta |
417 |
Q |
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| T |
45379390 |
ggaatggtcttagctctatgtacaagagaaagccaaagatgataaaggaagtaaagtattgagaagaagatgacaacagaagctgaaatggttagtgcta |
45379291 |
T |
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| Q |
418 |
tgaaaagaaactttggtttggtgaaaatattggaagttgtagaagttaattgtcttgaaggcatggtgttaagtgatgtgaatgaatgaatattgatgat |
517 |
Q |
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| T |
45379290 |
tgaaaagaaactttggtttggtgaaaatattggaagttgtagaagttaattgtcttgaaggcatggtgttatgtgatgtgaatgaatgaatattgatgat |
45379191 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 138 - 223
Target Start/End: Complemental strand, 5568519 - 5568434
Alignment:
| Q |
138 |
tgcaaagacaaagagtccaaccttttgatggcaatgaattttccatctttaagtactcccttgaaaacagtaccagaaccaccttt |
223 |
Q |
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| T |
5568519 |
tgcaaagacaacgagtccaagcacttgatggcaatcaattttccaactttaagtattcccttgaaaacaatatcagactcaccttt |
5568434 |
T |
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