View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9703_low_8 (Length: 469)
Name: NF9703_low_8
Description: NF9703
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9703_low_8 |
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Alignment Details
Target: chr5 (Bit Score: 389; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 389; E-Value: 0
Query Start/End: Original strand, 18 - 463
Target Start/End: Complemental strand, 40556841 - 40556396
Alignment:
| Q |
18 |
ccctcattattctttgtatcaggattgccaaaagcaattctcacccgtggtccatcacttcttcttgtcttgataagttttttcccaacaccctcatcgc |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40556841 |
ccctcattattctttgtatcaggattgccaaaagcaattctcacccgtggtccatcacttcttcttgtcttgataagttttttcccaacaccctcatcgc |
40556742 |
T |
|
| Q |
118 |
gtctacaatcagcaaccccgcgattctttgattcaagcataccatatttaagactgctaaaatctcttgtcgctgattggttccttcnnnnnnncttggt |
217 |
Q |
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|||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||| |
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| T |
40556741 |
gtctacaatcagtaaccccgcgattctttgattcaagcataccatatttaagaatgctaaaatctcttgtcgctgattggttccttctttttttcttggt |
40556642 |
T |
|
| Q |
218 |
tattattttgtcaaaaccttcattgcatccacaaacaacgtcctcatgattcttctttgatcgcttacttcttttttccttcactgtaactttcttaaaa |
317 |
Q |
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|
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
40556641 |
tattattttgtcaaaaccttcattgcatccacaaacaacatcctcatgattcttctttgatcggttacttcttttttccttcactgtaactttcttaaaa |
40556542 |
T |
|
| Q |
318 |
tcatcgttgcattccgaatcagcagcatagtactcctggttatttgaccgaagaatatgagaaacatcatctttgaattgattagctaagaacttagatc |
417 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||| |
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| T |
40556541 |
tcatcgttgcattccgaatcagcagcatagtactcccggttatttgaccgaagaatataagaaacatcatttttgaattgattagctaagaacttagatc |
40556442 |
T |
|
| Q |
418 |
gcaaacataataaattttccatcatccgataatcatcaccaccata |
463 |
Q |
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|||||| || |||||||||||||||||||||||||||||||||||| |
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| T |
40556441 |
gcaaacttagtaaattttccatcatccgataatcatcaccaccata |
40556396 |
T |
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