View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9704_high_1 (Length: 725)
Name: NF9704_high_1
Description: NF9704
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9704_high_1 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 623; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 623; E-Value: 0
Query Start/End: Original strand, 33 - 715
Target Start/End: Original strand, 27723524 - 27724206
Alignment:
| Q |
33 |
agagagattacgataaggatttccaataaggatcttgatggtttcttttaacaaatattttataccttctcattcaacacaatatttcttattataaatg |
132 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27723524 |
agagagattacgataaggatttccaagaaggatcttgatggtttcttttaacaaatattgtataccttctcattcaacacaatatttcttattataaatg |
27723623 |
T |
|
| Q |
133 |
agtcgtttgattttcaaaatttgttcaatatcctagttcaaaaaagaaatttgtacaatatctttggagtatgagattacttagaaaaatgtaatctact |
232 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27723624 |
agtcgtttgattttcaaaatttgttcaatatcctagttcaaaaaaaaaatttgtacaatatctttggagtatgagattacttagaaaaatgtaatctact |
27723723 |
T |
|
| Q |
233 |
accaattgtcgttttatggaatcttgagtacttagtttacattttgcatcttgctagtatttgtaagataactctagaattctataagcatgaataatta |
332 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27723724 |
accaattgtcgttgtatggaatcttgagtacttagtttacattttgcatcttgctagtatttgtaagataactctagaattctataagcatgaataatta |
27723823 |
T |
|
| Q |
333 |
catgtaacaaatgtagtgctcagaaagcataaacaaatgcactgaagttcaaactgatatactatcattagaatgccaaaaactcccagaatttgttgtc |
432 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||| |
|
|
| T |
27723824 |
catgtaacaaatgtagtgctcagaaagcataaacaaatgtactgaagttcaaactgatatactaacattagaataccaaaaactcccagaatttgttgtc |
27723923 |
T |
|
| Q |
433 |
tcaacagaaaatagagaacacgtgcataatataatcaaaatagaaaccaacatgattaacatgtgccatagaaagatttatcttacactaaagagaactt |
532 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27723924 |
tcaacagaaaatagagaacacgtgcataatataattaaaatagaaaccaacataattaacatgtgccatagaaagatttatcttacactaaagagaactt |
27724023 |
T |
|
| Q |
533 |
aaattttaaaacttgataatgaaatgataaatcatagaagctatgctcataaatcttgagagcaaatacattaagcttaagcaacaaatacctaattcga |
632 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
27724024 |
aaattttaaaacttgataatgaaataataaatcatagaagctatgctcataaatcttaagagcgaatacattaagcttaagcaacaaatacctaattcct |
27724123 |
T |
|
| Q |
633 |
tattcctcctgtcggaatgatatttttcttgtaaattactgtttgagaatgaaatctttcagctttaacaccaatgttctctg |
715 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
27724124 |
tattcctcctgtcggaatgatatttttcttgtaaattactgtttgagaatgaaatctttcagctttaacaccaatgttttctg |
27724206 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 346 - 681
Target Start/End: Original strand, 27735078 - 27735414
Alignment:
| Q |
346 |
tagtgctcagaaagcataaacaa-atgcactgaagttcaaactgatatactatcattagaatgccaaaaactcccagaatttgttgtctcaacagaaaat |
444 |
Q |
| |
|
|||||| |||||||||||||||| ||| || ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27735078 |
tagtgcgcagaaagcataaacaagatgtaccgaagttcaaactgatatactatcattagaataccaaaaactcccagaatttgttgtctcaacagaaaat |
27735177 |
T |
|
| Q |
445 |
agagaacacgtgcataatataatcaaaatagaaaccaacatgattaacatgtgccatagaaagatttatcttacactaaagagaacttaaattttaaaac |
544 |
Q |
| |
|
||| ||||||||||||||||||| ||||||||||||||||| || || |||||||||||||| ||||||||||||||||||| |||||||| ||||||| |
|
|
| T |
27735178 |
agaaaacacgtgcataatataattaaaatagaaaccaacataatgaaaatgtgccatagaaatatttatcttacactaaagataacttaaaccttaaaac |
27735277 |
T |
|
| Q |
545 |
ttgataatgaaatgataaatcatagaagctatgctcataaatcttgagagcaaatacattaagcttaagcaacaaatacctaattcgatattcctcctgt |
644 |
Q |
| |
|
| |||||| ||||||||||| |||||||||||||||||||||||||||| || || |||| |||| |||||||||||||||||| |||||||| | |
|
|
| T |
27735278 |
tagataataaaatgataaattgaagaagctatgctcataaatcttgagagcgaaaacgttaaacttaggcaacaaatacctaattctttattcctctgat |
27735377 |
T |
|
| Q |
645 |
cggaatgatatttttcttgtaaattactgtttgagaa |
681 |
Q |
| |
|
||||||||||||||||||||||| |||| |||||||| |
|
|
| T |
27735378 |
cggaatgatatttttcttgtaaagtactatttgagaa |
27735414 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 149; Significance: 3e-78; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 149; E-Value: 3e-78
Query Start/End: Original strand, 409 - 713
Target Start/End: Original strand, 14681555 - 14681862
Alignment:
| Q |
409 |
caaaaactcccagaatttgttgtctcaacagaaaatagagaacacgtgcataatataatcaaaatagaaaccaacatgattaacatgtgccatagaaaga |
508 |
Q |
| |
|
|||||||||||| ||| | |||||||||| ||||||||||||| ||||||||||||| |||||||||||||||| || || ||||| |||||||||| |
|
|
| T |
14681555 |
caaaaactcccataataagctgtctcaacacaaaatagagaacatatgcataatataattaaaatagaaaccaacacaatcaaaatgtgtcatagaaaga |
14681654 |
T |
|
| Q |
509 |
tttatcttacactaaagagaacttaaattttaaaacttgataatgaaatgataaatcatagaagctatgctcataaatcttgagagcaaatacattaagc |
608 |
Q |
| |
|
|||||||||||||||||||||||||| || ||||||||||| |||||||||||||||| |||||||||| |||||||||||||| || || |||||| |
|
|
| T |
14681655 |
tttatcttacactaaagagaacttaagcctt--aacttgataataaaatgataaatcatagcagctatgctcttaaatcttgagagcgaaaacgttaagc |
14681752 |
T |
|
| Q |
609 |
ttaagcaacaaatacctaattcgatattcctc-ctg-tcggaatgatatttttcttgtaaattactgtttgagaatga---aatctttcagctttaacac |
703 |
Q |
| |
|
||| |||||||||||||||||| |||||||| ||| | ||||| |||||||||||||||||||||||||||||| | |||||||||| |||||||| |
|
|
| T |
14681753 |
ttaggcaacaaatacctaattctttattcctctctgattggaataatatttttcttgtaaattactgtttgagaagaacataatctttcagttttaacac |
14681852 |
T |
|
| Q |
704 |
caatgttctc |
713 |
Q |
| |
|
|||||||||| |
|
|
| T |
14681853 |
caatgttctc |
14681862 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 91; E-Value: 1e-43
Query Start/End: Original strand, 32 - 150
Target Start/End: Original strand, 14681227 - 14681345
Alignment:
| Q |
32 |
gagagagattacgataaggatttccaataaggatcttgatggtttcttttaacaaatattttataccttctcattcaacacaatatttcttattataaat |
131 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||| ||||||||||||| | ||| |
|
|
| T |
14681227 |
gagagagattacgataaggatttccaataaggatcttgatggtttcttttaacaaatattttatgccttctcactcaacataatatttcttatttttaat |
14681326 |
T |
|
| Q |
132 |
gagtcgtttgattttcaaa |
150 |
Q |
| |
|
|| | |||||||||||||| |
|
|
| T |
14681327 |
gaattgtttgattttcaaa |
14681345 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 32 - 151
Target Start/End: Original strand, 9487100 - 9487217
Alignment:
| Q |
32 |
gagagagattacgataaggatttccaataaggatcttgatggtttcttttaacaaatattttataccttctcattcaacacaatatttcttattataaat |
131 |
Q |
| |
|
|||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||| |||||| ||||||| ||||||||||||| ||||| |
|
|
| T |
9487100 |
gagagagattacgataaggatttccatg--ggattttgatggtttcttttaacaaatattttatatcttctccttcaacataatatttcttattttaaat |
9487197 |
T |
|
| Q |
132 |
gagtcgtttgattttcaaaa |
151 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
9487198 |
aagtcgtttgattttcaaaa |
9487217 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 184 - 319
Target Start/End: Original strand, 14681349 - 14681485
Alignment:
| Q |
184 |
tgtacaatatctttggagtatgagattacttagaaaaatgtaatctactaccaattgtcgttttatggaatc-ttgagtacttagtttacattttgcatc |
282 |
Q |
| |
|
||||||| || ||||||||| ||||||||||||||||| |||||||| |||| ||||||||| |||||||| |||||||||| |||||||||||| ||| |
|
|
| T |
14681349 |
tgtacaagatgtttggagtaagagattacttagaaaaacgtaatctagtaccgattgtcgttcgatggaatctttgagtacttggtttacattttggatc |
14681448 |
T |
|
| Q |
283 |
ttgctagtatttgtaagataactctagaattctataa |
319 |
Q |
| |
|
||| |||||||| | |||||||||| ||||| |||| |
|
|
| T |
14681449 |
ttgtcagtatttgcatgataactctaaaattccataa |
14681485 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 186 - 325
Target Start/End: Original strand, 9487222 - 9487359
Alignment:
| Q |
186 |
tacaatatctttggagtatgagattacttagaaaaatgtaatctactaccaattgtcgttttatggaatcttgagtacttagtttacattttgcatcttg |
285 |
Q |
| |
|
||||| || |||||||||||||||||||||| |||||||||||||||| | | ||| |||| |||||||| | |||||| ||||||||||||||| ||| |
|
|
| T |
9487222 |
tacaagatgtttggagtatgagattacttagcaaaatgtaatctacta-cgactgtggtttgatggaatcatcggtactttgtttacattttgcatattg |
9487320 |
T |
|
| Q |
286 |
ctagtatttgtaagataactctagaattctataagcatga |
325 |
Q |
| |
|
||||||| | |||||||||| |||| |||||||||| |
|
|
| T |
9487321 |
tcggtatttgcatgataactcta-aatttcataagcatga |
9487359 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University