View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9704_high_15 (Length: 291)
Name: NF9704_high_15
Description: NF9704
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9704_high_15 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 264; Significance: 1e-147; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 1 - 272
Target Start/End: Original strand, 27549018 - 27549289
Alignment:
| Q |
1 |
cattggttcaagtatgagatggaaaacatactacagtcactgagttgtagtttgagcagcagccacagtagaaaccattgagtccactccacagatattt |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27549018 |
cattggttcaagtatgagatggaaaacatactacagtcagtgagttgtagtttgagcagcagccacagtagaaaccattgagtccactccacagatattt |
27549117 |
T |
|
| Q |
101 |
cgtcccctacaaatcttatagtatccattttctccccacgtctcgccccaggagtttttaacaatccaatacggcttctccttcgtataagctccagaac |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27549118 |
cgtcccctacaaatcttatagtatccattttctccccacgtctcgccccaggagcttttaacaatccaatacggcttctccttcgtataagctccagaac |
27549217 |
T |
|
| Q |
201 |
cgtaccccaccagcaaaactccatgatccagcctccttgtacaagtgtatgggcacgatacacctcccacgt |
272 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27549218 |
cgtaccccaccagcaaaactccatgatccagcctccttgtacaagtgtatgggcacgatacacctcccacgt |
27549289 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 148; E-Value: 4e-78
Query Start/End: Original strand, 3 - 272
Target Start/End: Complemental strand, 27945701 - 27945420
Alignment:
| Q |
3 |
ttggttcaagtatgagatggaaaacatactacagtcactgagttgtagtttgagcagcagccacagtagaaaccattgagtccactccacagatatttcg |
102 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27945701 |
ttggttcaagtatgagatggaaaacatactactgtcactgagtattagtgtgagcagcagccacagtagaaaccattgagtccactccacagatatttcg |
27945602 |
T |
|
| Q |
103 |
tcccctacaaatcttatagtatccattttctccccacgtctcgccccaggagtttttaacaatccaatacggcttctc------cttcgtat------aa |
190 |
Q |
| |
|
|||||| |||||||| |||||||| || |||||||| ||||| ||||| ||||||||||| ||||||||||||||||| |||| ||| | |
|
|
| T |
27945601 |
tcccctgcaaatcttgtagtatccgttctctccccaggtctcaccccacgagtttttaacgatccaatacggcttctccttctccttcatatcagctcca |
27945502 |
T |
|
| Q |
191 |
gctccagaaccgtaccccaccagcaaaactccatgatccagcctccttgtacaagtgtatgggcacgatacacctcccacgt |
272 |
Q |
| |
|
||||||||||| |||||||| |||||||||||| ||||||||||||||||||| |||||||||| |||| |||||||||| |
|
|
| T |
27945501 |
gctccagaaccataccccacaagcaaaactccaagatccagcctccttgtacatatgtatgggcatgatattcctcccacgt |
27945420 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 3 - 272
Target Start/End: Complemental strand, 27437209 - 27436928
Alignment:
| Q |
3 |
ttggttcaagtatgagatggaaaacatactacagtcactgagttgtagtttgagcagcagccacagtagaaaccattgagtccactccacagatatttcg |
102 |
Q |
| |
|
||||| || ||||||||| |||| |||||||| |||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27437209 |
ttggtacatgtatgagatagaaatcatactactgtcactgagtagtagtgtgagcagcagccacagtagaaaccattgagtccactccacagatatttcg |
27437110 |
T |
|
| Q |
103 |
tcccctacaaatcttatagtatccattttctccccacgtctcgccccaggagtttttaacaatccaatacggcttctc------cttcgtat------aa |
190 |
Q |
| |
|
||| || |||||||| |||||||| || |||||||| ||||| ||||| ||||||||||| ||||||||||||||||| |||| ||| | |
|
|
| T |
27437109 |
tcctctgcaaatcttgtagtatccgttctctccccaggtctcaccccacgagtttttaacgatccaatacggcttctccttctccttcatatcagctcca |
27437010 |
T |
|
| Q |
191 |
gctccagaaccgtaccccaccagcaaaactccatgatccagcctccttgtacaagtgtatgggcacgatacacctcccacgt |
272 |
Q |
| |
|
||||||||||| |||||||| |||||||||||| ||||||||||||||||||| |||||||||| |||| |||||||||| |
|
|
| T |
27437009 |
gctccagaaccataccccacaagcaaaactccaagatccagcctccttgtacatatgtatgggcatgatattcctcccacgt |
27436928 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 59 - 184
Target Start/End: Complemental strand, 26766481 - 26766356
Alignment:
| Q |
59 |
gcagccacagtagaaaccattgagtccactccacagatatttcgtcccctacaaatcttatagtatccattttctccccacgtctcgccccaggagtttt |
158 |
Q |
| |
|
|||||||||||||||||||| ||||||||||| ||||||||||||||||| || || ||||||||||||||||||||||| ||||| ||||| ||||||| |
|
|
| T |
26766481 |
gcagccacagtagaaaccatagagtccactccgcagatatttcgtcccctgcatattttatagtatccattttctccccaagtctcaccccatgagtttt |
26766382 |
T |
|
| Q |
159 |
taacaatccaatacggcttctccttc |
184 |
Q |
| |
|
||| |||||||| |||||||||||| |
|
|
| T |
26766381 |
taattatccaatatggcttctccttc |
26766356 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University