View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9704_high_23 (Length: 239)
Name: NF9704_high_23
Description: NF9704
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9704_high_23 |
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Alignment Details
Target: chr2 (Bit Score: 219; Significance: 1e-120; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 30681654 - 30681876
Alignment:
| Q |
1 |
attttccagctattttgaaatatctaatttatgttatacaaaatattccatcacattttaatcaaatttattttatttttattagacattccaaatatta |
100 |
Q |
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| T |
30681654 |
attttccagctattttaaaatatctaatttatgttatacaaaatattccatcacattttaatcaaatttattttatttttattagacattccaaatatta |
30681753 |
T |
|
| Q |
101 |
ttccatgcaaaacacgagttgattgcccggtagatatgtgtgaactttcacaaattgtgtggtgtattgatggttcttgtaaatgcttgtaaatataaaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30681754 |
ttccatgcaaaacacgagttgattgcccggtagatatgtgtgaactttcacaaattgtgtggtgtattgatggttcttgtaaatgcttgtaaatataaaa |
30681853 |
T |
|
| Q |
201 |
ataagttgaagaataattatata |
223 |
Q |
| |
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||||||||||||||||||||||| |
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| T |
30681854 |
ataagttgaagaataattatata |
30681876 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 10 - 224
Target Start/End: Complemental strand, 30944962 - 30944747
Alignment:
| Q |
10 |
ctattttgaaatatctaatttatgttatacaaaatattccatcacattttaatcaaatttattttatttttattagacattccaaatattattccatgca |
109 |
Q |
| |
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||||||| ||||||||||||| | || || |||||||| |||||| ||||||| | |||| |||||||| ||| ||||| || || ||||||||||| |
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| T |
30944962 |
ctattttcaaatatctaatttctcttttataaaatatttcatcaccttttaataacatttcttttatttctatccaacattacagattctattccatgca |
30944863 |
T |
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| Q |
110 |
aaacacgagttgattgcccggtagatatgtgtgaactttcacaaattgtgtggtgtattgatggttcttgtaaatgcttgtaaatataa-aaataagttg |
208 |
Q |
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| T |
30944862 |
caacacatgctcaatgtccgggagatatgtgtgaacttcctcaaattgtgtggtgtgttgttggtttttgtgaatgtgcgtaaaagtaacaaataagttg |
30944763 |
T |
|
| Q |
209 |
aagaataattatatat |
224 |
Q |
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|| ||||||| ||||| |
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| T |
30944762 |
aaaaataattctatat |
30944747 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 10 - 186
Target Start/End: Complemental strand, 30950721 - 30950545
Alignment:
| Q |
10 |
ctattttgaaatatctaatttatgttatacaaaatattccatcacattttaatcaaatttattttatttttattagacattccaaatattattccatgca |
109 |
Q |
| |
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||||||||||||||||||||| | ||||| |||||||| |||||| ||||||| ||| || ||||||||| || ||||| || || ||||| ||||| |
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| T |
30950721 |
ctattttgaaatatctaatttctcttatataaaatatttcatcaccttttaataaaaattcttttattttaatccaacattacagattctattctatgca |
30950622 |
T |
|
| Q |
110 |
aaacacgagttgattgcccggtagatatgtgtgaactttcacaaattgtgtggtgtattgatggttcttgtaaatgc |
186 |
Q |
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| T |
30950621 |
caacacacgctcaatgtccgggagatatgtgtgaacttcctcaatttgtgtggtgtgttgttggtttttgtgaatgc |
30950545 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 9 - 90
Target Start/End: Original strand, 30955659 - 30955740
Alignment:
| Q |
9 |
gctattttgaaatatctaatttatgttatacaaaatattccatcacattttaatcaaatttattttatttttattagacatt |
90 |
Q |
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|||||||| ||||||||||||| | ||||| || |||||||||||| ||||||| | | ||||||||||||| |||| |||| |
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| T |
30955659 |
gctattttcaaatatctaatttctcttatataagatattccatcaccttttaataacaattattttatttttcttagccatt |
30955740 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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