View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9704_high_4 (Length: 484)
Name: NF9704_high_4
Description: NF9704
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9704_high_4 |
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Alignment Details
Target: chr4 (Bit Score: 242; Significance: 1e-134; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 233 - 474
Target Start/End: Complemental strand, 8364362 - 8364121
Alignment:
| Q |
233 |
ctactcaaggtgacatggggaattttggaagctaattaaatgctatctcataaacttacttttcattgtgtactctttctcctctgtcaacaaagcatgt |
332 |
Q |
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| T |
8364362 |
ctactcaaggtgacatggggaattttggaagctaattaaatgctatctcataaacttacttttcattgtgtactctttctcctctgtcaacaaagcatgt |
8364263 |
T |
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| Q |
333 |
tgaatgcaaatcaaagccatgttaatatgaattcaatcatgttcaatggtgaataaatgaaatgtcaaagaaactgaaacaacacaaataatgtaagggt |
432 |
Q |
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| T |
8364262 |
tgaatgcaaatcaaagccatgttaatatgaattcaatcatgttcaatggtgaataaatgaaatgtcaaagaaactgaaacaacacaaataatgtaagggt |
8364163 |
T |
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| Q |
433 |
taagaaactgaagttaacacaattgtttcgcattcacctatg |
474 |
Q |
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| T |
8364162 |
taagaaactgaagttaacacaattgtttcgcattcacctatg |
8364121 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 145; E-Value: 4e-76
Query Start/End: Original strand, 233 - 474
Target Start/End: Complemental strand, 8380175 - 8379930
Alignment:
| Q |
233 |
ctactcaaggtgacatggggaattttggaagctaattaaatgct----atctcataaacttacttttcattgtgtactctttctcctctgtcaacaaagc |
328 |
Q |
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| T |
8380175 |
ctactcaatgtgacatggggaattttggaaggcaattaactgatgtatatctcataaacttaccttacattgtgtactctttcctctctgtcaacaaagc |
8380076 |
T |
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| Q |
329 |
atgttgaatgcaaatcaaagccatgttaatatgaattcaatcatgttcaatggtgaataaatgaaatgtcaaagaaactgaaacaacacaaataatgtaa |
428 |
Q |
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| T |
8380075 |
atgtcgaatacaaattaaatccatgttaatatgaattcaatcatgttcaatgatgaataaatgaaattgaaaagaaactaaaacaacacaaataatgtaa |
8379976 |
T |
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| Q |
429 |
gggttaagaaactgaagttaacacaattgtttcgcattcacctatg |
474 |
Q |
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| T |
8379975 |
gggttaagaaactgaagttaagacaattgtttggcatttacctatg |
8379930 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 131; E-Value: 9e-68
Query Start/End: Original strand, 42 - 200
Target Start/End: Complemental strand, 8364553 - 8364395
Alignment:
| Q |
42 |
gtgaactgacaaaacggtaacaaaatacaaaacatttatgtgtggaatgaatccacacatatatacttgaatgtaacataacaaaatgtcagcnnnnnnn |
141 |
Q |
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| T |
8364553 |
gtgaactgacaaaacggtaacaaaatacaaaacatttatgtgtggaatgaatccacgcatatatacttgaatgtaacataacaaaatgtcagcttttttt |
8364454 |
T |
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| Q |
142 |
ngcagatttatgtcttgtattaaatttgaaagttgtatattacattctcaattttctag |
200 |
Q |
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| T |
8364453 |
tgcagatttatgtcttgtattaaatttgaaagttgtatattacattctcaattttctag |
8364395 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 399 - 474
Target Start/End: Complemental strand, 8371076 - 8371001
Alignment:
| Q |
399 |
aaagaaactgaaacaacacaaataatgtaagggttaagaaactgaagttaacacaattgtttcgcattcacctatg |
474 |
Q |
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| T |
8371076 |
aaagaaactaaaacaacacaaataatgtaagggttaagaaactgaagttaagacaattgtttggcattcacctatg |
8371001 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 143 - 198
Target Start/End: Complemental strand, 8380266 - 8380211
Alignment:
| Q |
143 |
gcagatttatgtcttgtattaaatttgaaagttgtatattacattctcaattttct |
198 |
Q |
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| T |
8380266 |
gcagatctatgtcttgtattaaatttgaaagttgtatattacattctcaattttct |
8380211 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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