View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9704_high_5 (Length: 459)
Name: NF9704_high_5
Description: NF9704
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9704_high_5 |
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Alignment Details
Target: chr8 (Bit Score: 396; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 396; E-Value: 0
Query Start/End: Original strand, 18 - 453
Target Start/End: Complemental strand, 4825041 - 4824605
Alignment:
| Q |
18 |
atttcctcaccatgggattgaaaaatgggttccgttaggaaactaatatgacgatgaacgcagtcacgtgaggtctcttgatggacnnnnnnn-tagaaa |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
4825041 |
atttcctcaccatgggattgaaaaatgggttccgttaggaaactaatatgacgatgaacgcagtcacgtgaggtctcttgatggacaaaaaaaatagaaa |
4824942 |
T |
|
| Q |
117 |
atgctttctacatcagtgaagatatgacacaaaaccactacagttagaggaaagctatccactcaagagaagaaacatgcatgatgacaatgctttaact |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4824941 |
atgctttctacatcagtgaagatatgacacaaaaccactacagttagaggaaagctatccactcaagagaagaaacatgcatgatgacaatgctttaact |
4824842 |
T |
|
| Q |
217 |
tggatcatatttctgctaaagtaaatattttgtttcaaaatgttgataaattcggtgtgaatattttgcttcaattgtgatggttaaggtttagaggatc |
316 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4824841 |
tggatcatatttatgctaaagtaaatattttgtttcaaaatgttgataaattcggtgtgaatattttgcttcaattgtgatggttaaggtttagaggatc |
4824742 |
T |
|
| Q |
317 |
caaataagggagaagagaaggagaatgtccatcagagaaatgccaaaccaataagagaagtagtagagaaagggacatgtgaggagataaataaaactaa |
416 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
4824741 |
caaataagggagaagagaaggagaatgtccatcagagaaatgccaaaccaataagagaagaagtagagaaagggacatgtgaggagataaataaaactaa |
4824642 |
T |
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| Q |
417 |
tatgtcccatcaccatcattcaaggcacctatgcttc |
453 |
Q |
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||||||||||||||||||||||||||||| ||||||| |
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| T |
4824641 |
tatgtcccatcaccatcattcaaggcacccatgcttc |
4824605 |
T |
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