View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9704_low_11 (Length: 380)
Name: NF9704_low_11
Description: NF9704
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9704_low_11 |
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Alignment Details
Target: chr5 (Bit Score: 256; Significance: 1e-142; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 18 - 370
Target Start/End: Complemental strand, 11884484 - 11884130
Alignment:
| Q |
18 |
atgtggatggatgttgaacttatcgccagtaaagcagttgggtaggttttttaactatcaaattcttttatatattaaagccttgtgtgaacccttgttg |
117 |
Q |
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| T |
11884484 |
atgtggacggatgttgaacttatcgccagtaaagcagttgggtaggttttttaactatcaaattcttttatatattaaagccttgtgtgaacccttgttg |
11884385 |
T |
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| Q |
118 |
tgatctgtgatatttttgtttccgtttatgtgctttgcaccggatacgtcttatattcatttgagtgagtgttaataaaattagtcgtttnnnnnnnnnn |
217 |
Q |
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| T |
11884384 |
tgatctgtgatctttttgtttccgtttatgtgctttgcaccggatacgtcttatattcatttgagtgagtgttaataaaattagtcgtttaaaaaaaaaa |
11884285 |
T |
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| Q |
218 |
ntgcagaccttaagggtgtgaatacaaagccagtccctgttatatatatgtgtgttgatatgtcatttttcttttacacag--nnnnnnnnncaggtcga |
315 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||| |
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| T |
11884284 |
atgcagaccttaagggtgtgaatgcaaagccagtccctgttatatatatgtgtgttgatatgtcatttttcatttacacagtttttttttttcaggtcga |
11884185 |
T |
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| Q |
316 |
ctactcatacttgttcacatgtcatttcagaattcgatactattgaagttctctg |
370 |
Q |
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|||||||||||||||||||||||||||||||||| | ||||||| |||||||||| |
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| T |
11884184 |
ctactcatacttgttcacatgtcatttcagaattgggtactattaaagttctctg |
11884130 |
T |
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