View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9704_low_13 (Length: 356)

Name: NF9704_low_13
Description: NF9704
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9704_low_13
NF9704_low_13
[»] chr7 (3 HSPs)
chr7 (16-151)||(2731812-2731947)
chr7 (255-347)||(2731596-2731688)
chr7 (255-346)||(6468105-6468194)
[»] chr2 (1 HSPs)
chr2 (255-345)||(19500940-19501030)
[»] scaffold0201 (1 HSPs)
scaffold0201 (255-345)||(16319-16409)
[»] chr8 (2 HSPs)
chr8 (255-345)||(29346775-29346865)
chr8 (255-346)||(4461113-4461204)
[»] chr4 (1 HSPs)
chr4 (255-345)||(14443455-14443545)
[»] chr3 (1 HSPs)
chr3 (278-344)||(2637084-2637150)


Alignment Details
Target: chr7 (Bit Score: 108; Significance: 4e-54; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 16 - 151
Target Start/End: Complemental strand, 2731947 - 2731812
Alignment:
Q  16 gttctaaccttggagctctatgacccaaatcatctaattttctgttttcaagtaaaaatcattaaaacaataattgattattattctcatgttttctttg 115  Q
    ||||||||||||||||||||||| ||||||||||||||||| | ||||||| ||||||| ||||||||||||| ||||||||||||||||||||||||||    
T  2731947 gttctaaccttggagctctatgatccaaatcatctaattttttattttcaaataaaaattattaaaacaataactgattattattctcatgttttctttg 2731848  T
Q  116 tctatatcactcatgtttttattagccaaaacatta 151  Q
    ||||||||||||||||||||||| ||||||||||||    
T  2731847 tctatatcactcatgtttttatttgccaaaacatta 2731812  T

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Target: chr7; HSP #2
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 255 - 347
Target Start/End: Complemental strand, 2731688 - 2731596
Alignment:
Q  255 acaatccactctttcattaaagaaacaaactaagagagaacaaagaccagactttaagaggggcattccccatccaagtacgtgatcctatgc 347  Q
    |||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||| ||||||| |||| ||||||||||||||||||    
T  2731688 acaatccactctttcattaaagtaacaaaccaagagagaacaaagaccagactttaagaggagcattcctcatctaagtacgtgatcctatgc 2731596  T

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Target: chr7; HSP #3
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 255 - 346
Target Start/End: Original strand, 6468105 - 6468194
Alignment:
Q  255 acaatccactctttcattaaagaaacaaactaagagagaacaaagaccagactttaagaggggcattccccatccaagtacgtgatcctatg 346  Q
    |||||||||||||||||||||||||||||| ||||||||||||| |||  |||||||| ||||||||||||| |||||||||||||||||||    
T  6468105 acaatccactctttcattaaagaaacaaaccaagagagaacaaaaacc--actttaaggggggcattccccacccaagtacgtgatcctatg 6468194  T

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Target: chr2 (Bit Score: 83; Significance: 3e-39; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 255 - 345
Target Start/End: Original strand, 19500940 - 19501030
Alignment:
Q  255 acaatccactctttcattaaagaaacaaactaagagagaacaaagaccagactttaagaggggcattccccatccaagtacgtgatcctat 345  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  19500940 acaatccactctttcattaaagaaacaaaccaagagagaacaaagaccagactttaagaggggcattccccacccaagtacgtgatcctat 19501030  T

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Target: scaffold0201 (Bit Score: 79; Significance: 7e-37; HSPs: 1)
Name: scaffold0201
Description:

Target: scaffold0201; HSP #1
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 255 - 345
Target Start/End: Original strand, 16319 - 16409
Alignment:
Q  255 acaatccactctttcattaaagaaacaaactaagagagaacaaagaccagactttaagaggggcattccccatccaagtacgtgatcctat 345  Q
    |||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  16319 acaatccactctttcattaaagaaacaaatcaagagagaacaaagaccagactttaagaggggcattccccacccaagtacgtgatcctat 16409  T

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Target: chr8 (Bit Score: 79; Significance: 7e-37; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 255 - 345
Target Start/End: Original strand, 29346775 - 29346865
Alignment:
Q  255 acaatccactctttcattaaagaaacaaactaagagagaacaaagaccagactttaagaggggcattccccatccaagtacgtgatcctat 345  Q
    |||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  29346775 acaatccactctttcattaaagaaacaaatcaagagagaacaaagaccagactttaagaggggcattccccacccaagtacgtgatcctat 29346865  T

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Target: chr8; HSP #2
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 255 - 346
Target Start/End: Complemental strand, 4461204 - 4461113
Alignment:
Q  255 acaatccactctttcattaaagaaacaaactaagagagaacaaagaccagactttaagaggggcattccccatccaagtacgtgatcctatg 346  Q
    ||||||||||||||||||||| |||||||| || ||||||||||||||||||||||||| |||||||||||| |||||||| ||||||||||    
T  4461204 acaatccactctttcattaaaaaaacaaaccaaaagagaacaaagaccagactttaagacgggcattccccacccaagtacatgatcctatg 4461113  T

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Target: chr4 (Bit Score: 79; Significance: 7e-37; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 255 - 345
Target Start/End: Original strand, 14443455 - 14443545
Alignment:
Q  255 acaatccactctttcattaaagaaacaaactaagagagaacaaagaccagactttaagaggggcattccccatccaagtacgtgatcctat 345  Q
    |||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  14443455 acaatccactctttcattaaagaaacaaatcaagagagaacaaagaccagactttaagaggggcattccccacccaagtacgtgatcctat 14443545  T

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Target: chr3 (Bit Score: 47; Significance: 9e-18; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 278 - 344
Target Start/End: Complemental strand, 2637150 - 2637084
Alignment:
Q  278 aacaaactaagagagaacaaagaccagactttaagaggggcattccccatccaagtacgtgatccta 344  Q
    ||||||| ||||||||||| |||||||||||||||| |||||||||||| |||||||| ||||||||    
T  2637150 aacaaaccaagagagaacacagaccagactttaagaagggcattccccacccaagtacatgatccta 2637084  T

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