View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9704_low_14 (Length: 335)
Name: NF9704_low_14
Description: NF9704
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9704_low_14 |
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Alignment Details
Target: chr3 (Bit Score: 140; Significance: 3e-73; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 17 - 160
Target Start/End: Complemental strand, 45223843 - 45223700
Alignment:
| Q |
17 |
aggaggccgctacggaagagaacatcgcagtcagtgacgtggcggtggagagtggcgatgagtgaatcgatttggctttgagtttggagtttaccgtggg |
116 |
Q |
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| T |
45223843 |
aggaggccgctacggaaaagaacatcgcagtcagtgacgtggcggtggagagtggcgatgagtgaatcgatttggctttgagtttggagtttaccgtggg |
45223744 |
T |
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| Q |
117 |
gtaaaatttgggattgacagtggtgagagagtgaaacggcgtcg |
160 |
Q |
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| T |
45223743 |
gtaaaatttgggattgacagtggtgagagagtgaaacggcgtcg |
45223700 |
T |
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Target: chr4 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 160 - 237
Target Start/End: Original strand, 44229712 - 44229792
Alignment:
| Q |
160 |
ggtgcggtgaggacggtggtggttgtgactgacgaaggcggctgc---ggtggtggtggtcagaaaggagggtgtggttgt |
237 |
Q |
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| T |
44229712 |
ggtgcggtgaggacggtggtggttgtgactgacgaaggcggttgcggtggtggtggtggtcagaaaggagggtgtggttgt |
44229792 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 54; Significance: 6e-22; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 161 - 234
Target Start/End: Original strand, 51276398 - 51276471
Alignment:
| Q |
161 |
gtgcggtgaggacggtggtggttgtgactgacgaaggcggctgcggtggtggtggtcagaaaggagggtgtggt |
234 |
Q |
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| T |
51276398 |
gtgcggtgaggctagtggtggttgtgactgacgaaggcagttgcggtggtggtggtcagaaaggagggtgtggt |
51276471 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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