View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9704_low_16 (Length: 329)
Name: NF9704_low_16
Description: NF9704
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9704_low_16 |
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Alignment Details
Target: chr6 (Bit Score: 290; Significance: 1e-163; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 290; E-Value: 1e-163
Query Start/End: Original strand, 1 - 314
Target Start/End: Original strand, 31061585 - 31061898
Alignment:
| Q |
1 |
tgaggaggagcagagagcaatgactcatcaatagcatcactaagatactcctaattttgattacctgcctcaccttgtggagctacctcaataaaattat |
100 |
Q |
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| T |
31061585 |
tgaggagaatcagagagcaatgattcatcaatagcatcactaagatactcctaattttgattacatgcctcaccttgtggagctacctcaataaaattat |
31061684 |
T |
|
| Q |
101 |
taaatcaagcaaagtggatatatatgcataattgtcttctttgcttgattgaactcccgttaattgaactgcttgaccatcctgcatatcatctaagatc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31061685 |
taaatcaagcaaagtggatatatatgcataattgtcttctttgcttgattgaactcccgttaattgaactgcttgaccatcctgcatatcatctaagatc |
31061784 |
T |
|
| Q |
201 |
attctgttccaaatagttacaaaatatcatcaatgtcatttgcatcagtcaaagcaacgatagtgttaattagtatatcacatgtattatagttgagctt |
300 |
Q |
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||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31061785 |
attctgttccaaatagttagaaaatatcatcaatgtcatttgcattagtcaaagcaacgatagtgttaattagtatatcacatgtattatagttgagctt |
31061884 |
T |
|
| Q |
301 |
gtagaattaaatct |
314 |
Q |
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|||||||||||||| |
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| T |
31061885 |
gtagaattaaatct |
31061898 |
T |
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