View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9704_low_17 (Length: 329)
Name: NF9704_low_17
Description: NF9704
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9704_low_17 |
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Alignment Details
Target: chr4 (Bit Score: 217; Significance: 1e-119; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 4 - 290
Target Start/End: Original strand, 2018222 - 2018515
Alignment:
| Q |
4 |
tggatttgatggattcgaaggattgggtcgctaatcagggtactgaacccacaactga---------ttggagaacccaactgcaacctgatcaacgcca |
94 |
Q |
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| T |
2018222 |
tggatttgatggattcgaaggattgggtcgctaatcagggtactgaacccactactgacacagttgattggagaactcaactgcaacctgatcaacgcca |
2018321 |
T |
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| Q |
95 |
aagaattgtcaacaaaatgtaagattcagtgtcaatactgtatcactgaggttatttaaataatatttttacctgtcgttgcatttcaaaagaaaattaa |
194 |
Q |
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| T |
2018322 |
aagaattgtcaataaaatgtaagattcagtatcaatattgtatca--gaggttatttaaatagtatttttacctgtcgttgcatttcaaaagaaaattaa |
2018419 |
T |
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| Q |
195 |
gaaatgaataaccaatccataacttgacaaccttcattgaagatttcttttgtttgttctatagatgcaattctatccaagaatggaagaagtgaa |
290 |
Q |
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| T |
2018420 |
gaaatgaataaccgatccatatcttgacaaccttcattgaagatttcttttgtttgttctatagatgcaattctatccaataatggaagaagtgaa |
2018515 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 156; E-Value: 7e-83
Query Start/End: Original strand, 25 - 284
Target Start/End: Original strand, 2020805 - 2021068
Alignment:
| Q |
25 |
attgggtcgctaatcagggtactgaaccca---------caactgattggagaacccaactgcaacctgatcaacgccaaagaattgtcaacaaaatgta |
115 |
Q |
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| T |
2020805 |
attgggtcgctaatcagggtactgaatccattgccgacacaattgattggagaactcaactgcaacctgatcaacgccaaagaattgtcaataatatgta |
2020904 |
T |
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| Q |
116 |
agattcagtgtcaatactgtatcactgaggttatttaaataatatttttacctgtcgttgcatttcaaaagaaaattaagaaatgaataaccaatccata |
215 |
Q |
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| T |
2020905 |
agatttggtgtcaatactgtgtca--gaggttatttaaatagtatttttacatgt---tgcatttcaaaagaaaattaagaaatgaataatcaatccata |
2020999 |
T |
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| Q |
216 |
acttgacaaccttcattgaagatttcttttgtttgttctatagatgcaattctatccaagaatggaaga |
284 |
Q |
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| T |
2021000 |
aattgagaacctttattgaagatttcttttgtttgttctatagatgcaattctatccaagaatggaaga |
2021068 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 53 - 228
Target Start/End: Original strand, 1989175 - 1989351
Alignment:
| Q |
53 |
cacaactgattggagaacccaactgcaacctgatcaacgccaaagaattgtcaacaaaatgtaagattcagtgtcaatactgtatcactgaggttattta |
152 |
Q |
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| T |
1989175 |
cacaagtgattggagaactcaaatacaacctgatcaacgccatagaatcgtcaacaaaatgtaagattcagtgtcagtactttatcactgaggttattta |
1989274 |
T |
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| Q |
153 |
aataatatttttacctgtcgttgcatttcaaaagaaaattaagaaatgaataaccaatccataac-ttgacaacctt |
228 |
Q |
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| T |
1989275 |
aatagcattgttagctgttgttgcatttgaaaagaaaattaagaaattaataatcaatccataactttgacaacctt |
1989351 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 59 - 135
Target Start/End: Original strand, 2035675 - 2035751
Alignment:
| Q |
59 |
tgattggagaacccaactgcaacctgatcaacgccaaagaattgtcaacaaaatgtaagattcagtgtcaatactgt |
135 |
Q |
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| T |
2035675 |
tgattggagaactcaactgcaacctgatcaacgccaaagaattgtcaataaaatgtaagattcagtttcaatactgt |
2035751 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000003; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 89 - 143
Target Start/End: Complemental strand, 44969406 - 44969352
Alignment:
| Q |
89 |
acgccaaagaattgtcaacaaaatgtaagattcagtgtcaatactgtatcactga |
143 |
Q |
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| T |
44969406 |
acgccaaagaattgtcaacaaaatgtaagctctagttttagtactgtatcactga |
44969352 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 89 - 117
Target Start/End: Original strand, 40910583 - 40910611
Alignment:
| Q |
89 |
acgccaaagaattgtcaacaaaatgtaag |
117 |
Q |
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| T |
40910583 |
acgccaaagaattgtcaacaaaatgtaag |
40910611 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 89 - 117
Target Start/End: Complemental strand, 44983729 - 44983701
Alignment:
| Q |
89 |
acgccaaagaattgtcaacaaaatgtaag |
117 |
Q |
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| T |
44983729 |
acgccaaagaattgtcaacaaaatgtaag |
44983701 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 93 - 133
Target Start/End: Complemental strand, 44999570 - 44999530
Alignment:
| Q |
93 |
caaagaattgtcaacaaaatgtaagattcagtgtcaatact |
133 |
Q |
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| T |
44999570 |
caaagaattgtcaacaaaatgtaagtttcagttttaatact |
44999530 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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