View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9704_low_18 (Length: 325)
Name: NF9704_low_18
Description: NF9704
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9704_low_18 |
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Alignment Details
Target: chr3 (Bit Score: 304; Significance: 1e-171; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 1 - 308
Target Start/End: Original strand, 42800302 - 42800609
Alignment:
| Q |
1 |
tacattccatatgccttcggatcaaaacaatcaacaacaagagcgaaaaaggaagaatctgatcaaccatcttagcaatctgctgaaaatcaaaccagga |
100 |
Q |
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| T |
42800302 |
tacattccatatgccttcggatcaaaacaatcaacaacaagagcgaaaaaggaagaatctgatcaaccatcttagcaatctgctgaaaatcaaaccagga |
42800401 |
T |
|
| Q |
101 |
ataagtggagaagctatcgctaactccaccgacaacatcagccaaaggaactgaatgaactctatccgccgccatagcacggtgagcctcttcagaaaac |
200 |
Q |
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| T |
42800402 |
ataagtggagaagctatcgctaactccaccgacaacatcagccaaaggaactgaacgaactctatccgccgccatagcacggtgagcctcttcagaaaac |
42800501 |
T |
|
| Q |
201 |
atcacattccgagaagaagaaccaccctcttcttgagaagcagcagctcgaaaccgttgccacgtacgaggaatcatgatcacgtgatcagctctgaagt |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42800502 |
atcacattccgagaagaagaaccaccctcttcttgagaagcagcagctcgaaaccgttgccacgtacgaggaatcatgatcacgtgatcagctctgaagt |
42800601 |
T |
|
| Q |
301 |
gaagaatc |
308 |
Q |
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|||||||| |
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| T |
42800602 |
gaagaatc |
42800609 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 24 - 92
Target Start/End: Complemental strand, 28980478 - 28980410
Alignment:
| Q |
24 |
aaaacaatcaacaacaagagcgaaaaaggaagaatctgatcaaccatcttagcaatctgctgaaaatca |
92 |
Q |
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||||||| ||||||||| ||||| |||||||||||||| |||| | |||||||| | |||||| |||| |
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| T |
28980478 |
aaaacaaccaacaacaaaagcgagaaaggaagaatctgctcaatccacttagcaaccagctgaatatca |
28980410 |
T |
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