View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9704_low_2 (Length: 641)
Name: NF9704_low_2
Description: NF9704
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9704_low_2 |
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| [»] chr4 (3 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 587; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 587; E-Value: 0
Query Start/End: Original strand, 8 - 641
Target Start/End: Complemental strand, 36764430 - 36763796
Alignment:
| Q |
8 |
aacctgtgacaaaagaggcaatattgtgactcctgcatgacctcctacaactggaacatcaacgtctcttggatcaacaccaagtacctctgcctgcaag |
107 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36764430 |
aacctgtgacaaaagaggcaatattgtgactcctgcatgacctcctacaactggaacatcaacgtctcttggatcaacaccaagtacctctgcctgcaag |
36764331 |
T |
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| Q |
108 |
agnnnnnnnn-tacacaggcatttactcatacaatagtaggaaggaaattcaattatgagatagaagaggagagctatgcttaccacaaaagtatttgcc |
206 |
Q |
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|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36764330 |
agaaaaaaaaatacacaggcatttactcatacaatagtaggaaggaaattcaattatgagatagaagaggagagctatgcttaccacaaaagtatttgcc |
36764231 |
T |
|
| Q |
207 |
ctcacaacatcgagggctgtaactcctaaaagtcgctttggatcatatgtaccagctttcttgaagacctcagcagcaattggcacagtggaattcactg |
306 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36764230 |
ctcacaacatcgagggctgtaactcctaaaagtcgctttggatcatatgtaccagctttcttgaagacctcagcagcaattggcacagtggaattcactg |
36764131 |
T |
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| Q |
307 |
gattgctaatcaagttgacaatcgcattggggcaacatttggcaattccttcgcaaagggttctcacaattccagcatttatcttaaataagtcgtccct |
406 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36764130 |
gattgctaatcaagttgacaatcgcattggggcaacatttggcaattccttcgcaaagggttctcacaattccagcatttatcttaaataagtcgtccct |
36764031 |
T |
|
| Q |
407 |
ggtcattccaggtttccttggcacaccagcaggtataactaccaagtccatgcctgtgagtgcattctcaagttgtggttgccccaaaaagccacgaacc |
506 |
Q |
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| T |
36764030 |
ggtcattccaggtttccttggcacaccagcaggtataactaccaagtccatgcctgtgagtgcattctcaagttgtggttgccccaaaaagccacgaacc |
36763931 |
T |
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| Q |
507 |
tagaaacccaaatacacttgaatcatttgaacatagtagaagctaaatattgttaaaacaacttgcacatccttaaaataaatagtggcctgaacagaat |
606 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||| |
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| T |
36763930 |
tagaaacccaaatacacttgaatcatttgaacatagtagaagctaaatattgttaaaacaactcgcatatccttaaaataaatagtggcctgaacagaat |
36763831 |
T |
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| Q |
607 |
ccaggttgaaccaaagaaaaacacaactattacta |
641 |
Q |
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| T |
36763830 |
tcaggttgaaccaaagaaaaacacaattattacta |
36763796 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 114; E-Value: 2e-57
Query Start/End: Original strand, 8 - 202
Target Start/End: Original strand, 11657205 - 11657400
Alignment:
| Q |
8 |
aacctgtgacaaaagaggcaatattgtgactcctgcatgacctcctacaactggaacatcaacgtctcttggatcaacaccaagtacctctgcctgcaag |
107 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||| || ||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
11657205 |
aacctgtgataaaagaggcaatattgtgactcctgcatgacctcctaccacaggaacatcaacttctcttggatcaacaccaagtacctctgcctgcaag |
11657304 |
T |
|
| Q |
108 |
ag--nnnnnnnntacacaggcatttactcatacaatagtaggaaggaaattcaattatgagatagaagaggagagctatgcttaccacaaaagtatt |
202 |
Q |
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|| ||||| ||||||||||||| |||||| |||||||||||| |||||||||||||||||| |||||||||||||||||||||||| |
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| T |
11657305 |
agaaaaggaaagtacac-cgcatttactcatattatagtaagaaggaaattcagttatgagatagaagaggaaagctatgcttaccacaaaagtatt |
11657400 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 106; E-Value: 1e-52
Query Start/End: Original strand, 8 - 202
Target Start/End: Original strand, 50233272 - 50233467
Alignment:
| Q |
8 |
aacctgtgacaaaagaggcaatattgtgactcctgcatgacctcctacaactggaacatcaacgtctcttggatcaacaccaagtacctctgcctgcaag |
107 |
Q |
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||||| ||| ||||||||||||||||| |||||||||||||||||||| |||||||||| ||| |||||||||||||||||||||||||||||||||||| |
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| T |
50233272 |
aacctatgataaaagaggcaatattgtaactcctgcatgacctcctaccactggaacattaacttctcttggatcaacaccaagtacctctgcctgcaag |
50233371 |
T |
|
| Q |
108 |
ag--nnnnnnnntacacaggcatttactcatacaatagtaggaaggaaattcaattatgagatagaagaggagagctatgcttaccacaaaagtatt |
202 |
Q |
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| T |
50233372 |
agaaaaggaaagtacgc-cgcatttactcatattatagtaggaaggaaattcaattatgagatagaagaggaaagctatgcttaccacgaaagtatt |
50233467 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 118; Significance: 7e-60; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 118; E-Value: 7e-60
Query Start/End: Original strand, 8 - 202
Target Start/End: Complemental strand, 7391640 - 7391445
Alignment:
| Q |
8 |
aacctgtgacaaaagaggcaatattgtgactcctgcatgacctcctacaactggaacatcaacgtctcttggatcaacaccaagtacctctgcctgcaag |
107 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||| || ||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
7391640 |
aacctgtgataaaagaggcaatattgtgactcctgcatgacctcctaccacaggaacatcaacttctcttggatcaacaccaagtacctctgcctgcaag |
7391541 |
T |
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| Q |
108 |
ag--nnnnnnnntacacaggcatttactcatacaatagtaggaaggaaattcaattatgagatagaagaggagagctatgcttaccacaaaagtatt |
202 |
Q |
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| T |
7391540 |
agaaaaggaaagtacac-cgcatttactcatattatagtaagaaggaaattcaattatgagatagaagaggaaagctatgcttaccacaaaagtatt |
7391445 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 118; E-Value: 7e-60
Query Start/End: Original strand, 8 - 202
Target Start/End: Original strand, 19585472 - 19585667
Alignment:
| Q |
8 |
aacctgtgacaaaagaggcaatattgtgactcctgcatgacctcctacaactggaacatcaacgtctcttggatcaacaccaagtacctctgcctgcaag |
107 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||| || ||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
19585472 |
aacctgtgataaaagaggcaatattgtgactcctgcatgacctcctaccacaggaacatcaacttctcttggatcaacaccaagtacctctgcctgcaag |
19585571 |
T |
|
| Q |
108 |
ag--nnnnnnnntacacaggcatttactcatacaatagtaggaaggaaattcaattatgagatagaagaggagagctatgcttaccacaaaagtatt |
202 |
Q |
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| T |
19585572 |
agaaaaggaaagtacac-cgcatttactcatattatagtaagaaggaaattcaattatgagatagaagaggaaagctatgcttaccacaaaagtatt |
19585667 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 53; Significance: 4e-21; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 228 - 508
Target Start/End: Original strand, 4990674 - 4990954
Alignment:
| Q |
228 |
actcctaaaagtcgctttggatcatatgtaccagctttcttgaagacctcagcagcaattggcacagtggaattcactggattgctaatcaagttgacaa |
327 |
Q |
| |
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||||| || |||| ||| |||||||| ||||||||| | ||||| |||||||| ||||| || |||||||| || ||||||||||| |||||||| |||| |
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| T |
4990674 |
actcccaacagtctcttgggatcataagtaccagctcttttgaaaacctcagccgcaataggaacagtggagttaactggattgcttatcaagtttacaa |
4990773 |
T |
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| Q |
328 |
tcgcattggggcaacatttggcaattccttcgcaaagggttctcacaattccagcatttatcttaaataagtcgtccctggtcattccaggtttccttgg |
427 |
Q |
| |
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|||| || || || || |||||| |||| ||||| || | || || |||||||| || || || | || || || |||||||||||||| | || |
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| T |
4990774 |
tcgccttaggacattgctttgcaattgcttcacaaagcgtcttaacgatcccagcattaatattgaagagatcatctcttgtcattccaggtttacgggg |
4990873 |
T |
|
| Q |
428 |
cacaccagcaggtataactaccaagtccatgcctgtgagtgcattctcaagttgtggttgccccaaaaagccacgaaccta |
508 |
Q |
| |
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||||||||||| || | |||||| ||||| ||||| ||||||| |||||| || |||||||||||| || |||||||| |
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| T |
4990874 |
aacaccagcaggaatgattaccaaatccatacctgttagtgcatcctcaagctgattttgccccaaaaatcctcgaaccta |
4990954 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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