View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9704_low_20 (Length: 309)
Name: NF9704_low_20
Description: NF9704
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9704_low_20 |
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Alignment Details
Target: chr8 (Bit Score: 225; Significance: 1e-124; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 17 - 291
Target Start/End: Original strand, 42320391 - 42320665
Alignment:
| Q |
17 |
actatattaaaatcacatgataaaattgaggtaggttatgatgttgatgcatattacaaagttcggtcaacgaatctt-ggattctaacctgggactctc |
115 |
Q |
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| T |
42320391 |
actatattaaaatcacatgataaaattgaggtaggttatgatgttgatgcatattacaaagttcggtcaacgaatcttaagattctaacctgagactctc |
42320490 |
T |
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| Q |
116 |
atagacctttg-ttataatccaaggggctttagtgagaggagacaccttaaaacacacatgttgcaaagacgttaaaaataacattgattgaaaatgtaa |
214 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42320491 |
atagacctttgtttataatccaaggggctttagtgagaggagacaccttaaaac-cacatgttgcaaagacgttaaaaataacattgattgaaaatgtaa |
42320589 |
T |
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| Q |
215 |
ccttgatctcataagcaacaaaataccgctgaaaaaactagtcgtttcaactctagcaacaccatcgagcccaagca |
291 |
Q |
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|||||||||||||||| || ||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42320590 |
ccttgatctcataagc-accaaataccaatgaaaaaactagtcgtttcaactctagcaacaccatcgagcccaagca |
42320665 |
T |
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