View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9704_low_23 (Length: 289)
Name: NF9704_low_23
Description: NF9704
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9704_low_23 |
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| [»] scaffold0041 (1 HSPs) |
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Alignment Details
Target: scaffold0041 (Bit Score: 198; Significance: 1e-108; HSPs: 1)
Name: scaffold0041
Description:
Target: scaffold0041; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 15 - 270
Target Start/End: Original strand, 86285 - 86551
Alignment:
| Q |
15 |
cacagacactagtgactctcgcatgatcaaccttccatttcaactctcttcattttattaacaggttctttcttattttctctattatt----------- |
103 |
Q |
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| T |
86285 |
cacagacactagtgactctcgcatgatcaaccttccatttcaactctcttcattttattaacaggttctttcttattttctctattattacaacaattat |
86384 |
T |
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| Q |
104 |
-ttactttatcatttacttcagtgtgagtgagacnnnnnnnnagttttgaaaataaaattacaaaaccttctactttctatttttgtggtatccaaattg |
202 |
Q |
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| T |
86385 |
tttactttatcatttacttcagtgtgagtgagacttttttt-agttttgaaaataaaattacaaaaccttctactttctatttttgtggtatccaaattg |
86483 |
T |
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| Q |
203 |
agaacaaaaccaagtttggtcggtagataataaagaaaacaaataagcttctcaaattagaattggtt |
270 |
Q |
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| T |
86484 |
agaacaaaaccaagtttggtcggtagataataaagaaaacaaataagcttctcaaattagaattggtt |
86551 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 198; Significance: 1e-108; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 15 - 270
Target Start/End: Complemental strand, 40879998 - 40879732
Alignment:
| Q |
15 |
cacagacactagtgactctcgcatgatcaaccttccatttcaactctcttcattttattaacaggttctttcttattttctctattatt----------- |
103 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40879998 |
cacagacactagtgactctcgcatgatcaaccttccatttcaactctcttcattttattaacaggttctttcttattttctctattattacaacaattat |
40879899 |
T |
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| Q |
104 |
-ttactttatcatttacttcagtgtgagtgagacnnnnnnnnagttttgaaaataaaattacaaaaccttctactttctatttttgtggtatccaaattg |
202 |
Q |
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| T |
40879898 |
tttactttatcatttacttcagtgtgagtgagacttttttt-agttttgaaaataaaattacaaaaccttctactttctatttttgtggtatccaaattg |
40879800 |
T |
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| Q |
203 |
agaacaaaaccaagtttggtcggtagataataaagaaaacaaataagcttctcaaattagaattggtt |
270 |
Q |
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| T |
40879799 |
agaacaaaaccaagtttggtcggtagataataaagaaaacaaataagcttctcaaattagaattggtt |
40879732 |
T |
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