View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9704_low_25 (Length: 278)
Name: NF9704_low_25
Description: NF9704
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9704_low_25 |
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Alignment Details
Target: chr4 (Bit Score: 212; Significance: 1e-116; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 13 - 261
Target Start/End: Original strand, 43376258 - 43376506
Alignment:
| Q |
13 |
gttcccgatctaccttaattcccactaatcaatcactgcattctacgtaatcattcttttttaataatttcaaccattgctgttacaatttcacattctt |
112 |
Q |
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| T |
43376258 |
gttcccgatctaccttaattcccactaatcaatccctgcattctacgtaatcattcttttttaataatttcaaccattgctgttacaattttacattctt |
43376357 |
T |
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| Q |
113 |
atcatcacaagtaagaccctccatctccctctctcttattcatgtttgtaacaaaatcattattannnnnnngtttgtgtctttcaattccataataact |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
43376358 |
atcatcacaagtaagaccctccatctccctctctcttattcatgtttgtaacaaaatcattatttattttttgtttgtgtctttcaattccataataact |
43376457 |
T |
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| Q |
213 |
attgatatttgaatataactgttgtaacaaataattttttataggttat |
261 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
43376458 |
attgatatttgaatataactgttgtaacaaataaatttttataggttat |
43376506 |
T |
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