View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9704_low_3 (Length: 608)
Name: NF9704_low_3
Description: NF9704
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9704_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 550; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 550; E-Value: 0
Query Start/End: Original strand, 11 - 592
Target Start/End: Original strand, 33050341 - 33050922
Alignment:
| Q |
11 |
cacagagaccacacagttaagcttgtcaaagagaaaagaagagacagagttgcaaggaagaggagtcaaggggaagccgtcacagggaggctaccacgca |
110 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33050341 |
cacagagaccacacagttaagcttgtcaaagagaaaagaagaaacagagttgcaaggaagaggagtcaaggggaagccgtcacagggaggctaccacgca |
33050440 |
T |
|
| Q |
111 |
cgtaaggaggaaaacaccactcatgcaattcataacatttttccaaaacacgttatccttaaccaccttttccacaatgatcccatctttactctttgct |
210 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
33050441 |
cgtaaggaggaaaacacccctcatgcaattcataacatttttccaaaacacgttatccttaaccgccttttccacaatgatcccatctttactctttgca |
33050540 |
T |
|
| Q |
211 |
agtttaccggacttccactctttcaatgtgaacataataataagtgctctataattgtaatgcaaacactctaatgtcaagtaagatgctgcaaaacgag |
310 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||| |
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| T |
33050541 |
agtttaccggacttccactctttcaatgtgaacataataataagtgctctataattgttatgcaaacactctaatttcaagtaagatgctgcaaaacgag |
33050640 |
T |
|
| Q |
311 |
tcatcgcaggttaaatcaaatagtgtctacagtaaatttgtgcaataaaagaatatgatcttctgtaaatgaatattgtgatattttttatcgctagcaa |
410 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33050641 |
tcattgcaggttaaatcaaatagtgtctacagtaaatttgtgcaataaaagaatatgatcttctgtaaatgaatattgtgatattttttatcgctagcaa |
33050740 |
T |
|
| Q |
411 |
tcatatcttgtggaaagaaatcttctcaaaattttccaacattaggtcgattcaatgagctgcacatggtgtccaatacaacttctcccacttttgcatc |
510 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33050741 |
tcatatcttgtggaaagaaatcttctcaaaattttccaacattaggtcgattcaatgagctgcacatggtgtccaatacaacttctcccacttttgcatc |
33050840 |
T |
|
| Q |
511 |
aacaattacccatcaactttgtaatttgctgcattgtccataaaaattgggacaagttcttcaacaacctttacaacaatat |
592 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
33050841 |
aacaattacccatcaactttgtaatttgctgcattgtccataaaaattgggacaagttcttcaacaaccttaacaacaatat |
33050922 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 516; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 516; E-Value: 0
Query Start/End: Original strand, 18 - 592
Target Start/End: Original strand, 42807121 - 42807685
Alignment:
| Q |
18 |
accacacagttaagcttgtcaaagagaaaagaagagacagagttgcaaggaagaggagtcaaggggaagccgtcacagggaggctaccacgcacgtaagg |
117 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42807121 |
accacacagttaagcttgtcaaagagaaaagaagaaacagagttgcaaggaagaggagtcaaggggaagccgtcacagggaggctaccacgcacgtaagg |
42807220 |
T |
|
| Q |
118 |
aggaaaacaccactcatgcaattcataacatttttccaaaacacgttatccttaaccaccttttccacaatgatcccatctttactctttgctagtttac |
217 |
Q |
| |
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||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||| |
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| T |
42807221 |
aggaaaacacccctcatgcaattcataacatttttccaaaacacgttatccttaaccgccttttccacaatgatcccatctttactctttgcaagtttac |
42807320 |
T |
|
| Q |
218 |
cggacttccactctttcaatgtgaacataataataagtgctctataattgtaatgcaaacactctaatgtcaagtaagatgctgcaaaacgagtcatcgc |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| || |
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| T |
42807321 |
cggacttccactctttcaatgtgaacataataataagtgctctataattgtaatgcaaacactctaatatcaagtaagatgctgcaaaacgagtcattgc |
42807420 |
T |
|
| Q |
318 |
aggttaaatcaaatagtgtctacagtaaatttgtgcaataaaagaatatgatcttctgtaaatgaatattgtgatattttttatcgctagcaatcatatc |
417 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
42807421 |
aggttaaatcaaatagtgtctacagtaaatttgtgcaataaaagaatatgatcttctgtaaatgaata----------ttttatcgctagcaatcatatc |
42807510 |
T |
|
| Q |
418 |
ttgtggaaagaaatcttctcaaaattttccaacattaggtcgattcaatgagctgcacatggtgtccaatacaacttctcccacttttgcatcaacaatt |
517 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42807511 |
ttgtggaaagaaatcttctcaaaattttccaacattaggtcgattcaatgagctgcacatggtgtccaatacaacttctcccacttttgcatcaacaatt |
42807610 |
T |
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| Q |
518 |
acccatcaactttgtaatttgctgcattgtccataaaaattgggacaagttcttcaacaacctttacaacaatat |
592 |
Q |
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| T |
42807611 |
acccatcaactttgtaatttgctgcattgtccataaaaattgggacaagttcttcaacaacctttacaacaatat |
42807685 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 112 - 592
Target Start/End: Original strand, 42764859 - 42765324
Alignment:
| Q |
112 |
gtaaggaggaaaacaccactcatgcaattcataacatttttccaaaacacgttatccttaaccaccttttccacaatgatcccatctttactctttgcta |
211 |
Q |
| |
|
|||||| |||||||||| ||||||||| ||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||| | |
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| T |
42764859 |
gtaagggggaaaacacccctcatgcaaatcataacatttttccaaaa---gttatccttaaccgccttttccacaatgatcccatctttactctttgcaa |
42764955 |
T |
|
| Q |
212 |
gtttaccggacttccactctttcaatgtgaacataataataagtgctctataattgtaatgcaaacactctaatgtcaagtaagatgctgcaaaacgagt |
311 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||| | |
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| T |
42764956 |
gtttaccggacttccattctttcaatgtgaacataataataagtgctctgtaattgtcatgcaaacactctaatgtcaagtaag---------------t |
42765040 |
T |
|
| Q |
312 |
catcgcaggttaaatcaaatagtgtctacagtaaatttgtgcaataaaagaatatgatcttctgtaaatgaatattgtgatattttttatcgctagcaat |
411 |
Q |
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| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||| ||| ||| |
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| T |
42765041 |
cgttgcaggttaaatcaaatagtgtctacagtaaatttgtgcaataaaagaatatgatcttgtgtaaatgaatgttgtgatattttttatcactataaat |
42765140 |
T |
|
| Q |
412 |
catatctt-gtggaaagaaatcttctcaaaattttccaacattaggtcgattcaatgagctgcacatggtgtccaatacaacttctcccacttttgcatc |
510 |
Q |
| |
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|||||||| |||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42765141 |
catatctttgtggaaagaaatcttctcaaaaaatttcaacattaggtcgattcaatgagctgcacatggtgtccaatacaacttctcccacttttgcatc |
42765240 |
T |
|
| Q |
511 |
aacaattacccatcaactttg--taatttgctgcattgtccataaaaattgggacaagttcttcaacaacctttacaacaatat |
592 |
Q |
| |
|
||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42765241 |
aacaattacccatcaactttgtataattttctgcattgtccataaaaattgggacaagttcttcaacaacctttacaacaatat |
42765324 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 11 - 100
Target Start/End: Original strand, 42764367 - 42764453
Alignment:
| Q |
11 |
cacagagaccacacagttaagcttgtcaaagagaaaagaagagacagagttgcaaggaagaggagtcaaggggaagccgtcacagggagg |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
42764367 |
cacagagaccacacagttaagcttgtcaaagagaaaagaa---acagagttgcaaggaagaggagtcagggggaagccgtcacagggagg |
42764453 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 431 - 491
Target Start/End: Complemental strand, 15658881 - 15658821
Alignment:
| Q |
431 |
tcttctcaaaattttccaacattaggtcgattcaatgagctgcacatggtgtccaatacaa |
491 |
Q |
| |
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|||||||||||| |||||||| | ||| || |||||||| |||||||||||||||||||| |
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| T |
15658881 |
tcttctcaaaatcctccaacatcaagtcaatacaatgagcagcacatggtgtccaatacaa |
15658821 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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