View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9704_low_30 (Length: 242)
Name: NF9704_low_30
Description: NF9704
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9704_low_30 |
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Alignment Details
Target: chr4 (Bit Score: 172; Significance: 1e-92; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 172; E-Value: 1e-92
Query Start/End: Original strand, 15 - 226
Target Start/End: Complemental strand, 51994922 - 51994711
Alignment:
| Q |
15 |
ggtaaatttcaagaactagtaaaatataaaattgataaacaaggcaagaccattattccttgtcttcaattacatgtttagatttataagaaaaatgcaa |
114 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||| |
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| T |
51994922 |
ggtaaatttcaagaaccagtaaaatataaaattgataaacaaggcaagaccattattccttgtcttccattacatgtttacatttataagaaaaatgcaa |
51994823 |
T |
|
| Q |
115 |
tccactttcatattactttgccccaattatggattaatatgccacaaattgcaactgatatccaattgtcatagatgcttgaattcatatttgttttggt |
214 |
Q |
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|| |||||||||||||||| |||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||| |||||||| |||||||| | |
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| T |
51994822 |
tcaactttcatattactttaccccaattattgattaatatgccacaaattgcagctgatatccaattgtcatagatgcttcaattcatacttgttttgat |
51994723 |
T |
|
| Q |
215 |
tacagtcatacc |
226 |
Q |
| |
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|||||||||||| |
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| T |
51994722 |
tacagtcatacc |
51994711 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 168; Significance: 4e-90; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 168; E-Value: 4e-90
Query Start/End: Original strand, 15 - 226
Target Start/End: Original strand, 27076833 - 27077044
Alignment:
| Q |
15 |
ggtaaatttcaagaactagtaaaatataaaattgataaacaaggcaagaccattattccttgtcttcaattacatgtttagatttataagaaaaatgcaa |
114 |
Q |
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||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||| |
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| T |
27076833 |
ggtaaatttcaagaactggtaaaatataaaattgataaacaaggcaagaccattattccttgtcttccattacatgtttacatttataagaaaaatgcaa |
27076932 |
T |
|
| Q |
115 |
tccactttcatattactttgccccaattatggattaatatgccacaaattgcaactgatatccaattgtcatagatgcttgaattcatatttgttttggt |
214 |
Q |
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|| ||||||||||||||||||||||||||| |||||||||||||||||||||| | |||||| |||||||||| ||||||||||||||| |||||||||| |
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| T |
27076933 |
tcaactttcatattactttgccccaattattgattaatatgccacaaattgcagcggatatcgaattgtcataaatgcttgaattcatacttgttttggt |
27077032 |
T |
|
| Q |
215 |
tacagtcatacc |
226 |
Q |
| |
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|| ||||||||| |
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| T |
27077033 |
tatagtcatacc |
27077044 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 15 - 226
Target Start/End: Complemental strand, 7841591 - 7841379
Alignment:
| Q |
15 |
ggtaaatttcaagaactagtaaaatataaaattgataaacaaggcaagaccattattccttgtcttcaattacatgtttagatttataagaaaaatgcaa |
114 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||| ||||||||||||||||||| |
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| T |
7841591 |
ggtaaatttcaagaactagtaaaatataaaattgataaacaaggcaggaccattattccttgtcttccattacatgtttacatttataagaaaaatgcaa |
7841492 |
T |
|
| Q |
115 |
tccactttcatattactttgccccaattatggattaatatgccacaaa-ttgcaactgatatccaattgtcatagatgcttgaattcatatttgttttgg |
213 |
Q |
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|| ||||||||||||||||||||||||||| ||||||||||||||||| ||||| |||||||||||||||||||||||||| |||||||| |||||||| |
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| T |
7841491 |
tcaactttcatattactttgccccaattattgattaatatgccacaaatttgcagctgatatccaattgtcatagatgcttcaattcatacttgttttgt |
7841392 |
T |
|
| Q |
214 |
ttacagtcatacc |
226 |
Q |
| |
|
|||| |||||||| |
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|
| T |
7841391 |
ttacggtcatacc |
7841379 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 15 - 199
Target Start/End: Complemental strand, 50447153 - 50446968
Alignment:
| Q |
15 |
ggtaaatttcaagaactagtaaaatataaaattgataaacaaggcaagaccattattccttgtcttcaattacatgtttagatttataagaaaaatgcaa |
114 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||| ||||| |
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| T |
50447153 |
ggtaaatttcgggaactagtaaaatataaaattgataaacaaggcaagaccattattccttgtcttctattacatgtttacatttataagaaaattgcaa |
50447054 |
T |
|
| Q |
115 |
tccactttcatattactttgccccaattatggattaatatgccacaaa-ttgcaactgatatccaattgtcatagatgcttgaatt |
199 |
Q |
| |
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|| ||||||||||||||||||||||||||| ||||||||||||| ||| ||||| |||||||||||||||||||||||||| |||| |
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| T |
50447053 |
tcaactttcatattactttgccccaattattgattaatatgccataaatttgcagctgatatccaattgtcatagatgcttcaatt |
50446968 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 95; Significance: 1e-46; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 15 - 211
Target Start/End: Complemental strand, 31491683 - 31491485
Alignment:
| Q |
15 |
ggtaaatttcaagaactagtaaaa-tataaaattgataaacaaggcaagaccattattccttgtcttcaattacatgtttagatttataagaaaaatgca |
113 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||| | ||||||| |||| ||| |||||||||||||| |
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| T |
31491683 |
ggtaaatttcaagaactagtaaaaatataaaattgataaacaaggcaagaccattattctcggtcattcattacatatttacattcataagaaaaatgca |
31491584 |
T |
|
| Q |
114 |
atccactttcatattactttgccccaattatggattaatatgccacaaa-ttgcaactgatatccaattgtcatagatgcttgaattcatatttgtttt |
211 |
Q |
| |
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||||| | |||||||||||| |||||||| | ||||||||||||||||| ||||| || ||||| |||||||| || ||||| ||||||| ||||||| |
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| T |
31491583 |
atccagtatcatattactttcccccaattgttgattaatatgccacaaatttgcagcttatatcaaattgtcacagttgcttccattcatacttgtttt |
31491485 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 52; Significance: 6e-21; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 100 - 225
Target Start/End: Complemental strand, 24534888 - 24534764
Alignment:
| Q |
100 |
ataagaaaaatgcaatccactttcatattactttgccccaattatggattaatatgccacaaattg-caactgatatccaattgtcatagatgcttgaat |
198 |
Q |
| |
|
||||||||||||||||| | |||||||||||| |||| ||| | | ||||||||||||||||| ||||||||||||||||||||||| ||||| || |
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| T |
24534888 |
ataagaaaaatgcaatctaatttcatattactc--cccctattgttgtttaatatgccacaaatttacaactgatatccaattgtcatagttgctttcat |
24534791 |
T |
|
| Q |
199 |
tcatatttgttttggttacagtcatac |
225 |
Q |
| |
|
||||| |||||||||||| ||||||| |
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|
| T |
24534790 |
tcatagttgttttggttattgtcatac |
24534764 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 100 - 186
Target Start/End: Original strand, 17169001 - 17169087
Alignment:
| Q |
100 |
ataagaaaaatgcaatccactttcatattactttgccccaattatggattaatatgccacaaatt-gcaactgatatccaattgtcat |
186 |
Q |
| |
|
|||||||||||||||| || || |||||||||| |||||||| | | ||||||||||||||||| |||||||||||||||||||||| |
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| T |
17169001 |
ataagaaaaatgcaattcaattccatattacttc-ccccaattgttgtttaatatgccacaaatttgcaactgatatccaattgtcat |
17169087 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 16 - 71
Target Start/End: Original strand, 17168912 - 17168967
Alignment:
| Q |
16 |
gtaaatttcaagaactagtaaaatataaaattgataaacaaggcaagaccattatt |
71 |
Q |
| |
|
|||||||| ||||||||| |||||||||||| || | ||||||||||||||||||| |
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|
| T |
17168912 |
gtaaattttaagaactagcaaaatataaaatcgagacacaaggcaagaccattatt |
17168967 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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