View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9704_low_4 (Length: 543)
Name: NF9704_low_4
Description: NF9704
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9704_low_4 |
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Alignment Details
Target: chr7 (Bit Score: 471; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 471; E-Value: 0
Query Start/End: Original strand, 19 - 497
Target Start/End: Complemental strand, 31414850 - 31414372
Alignment:
| Q |
19 |
acgcctcactcccttgtaccgcttccatacaggaggcgttcttacttcacgcgcctctacagttgtgtctaaatcattgtcacttttagggcttggaaaa |
118 |
Q |
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||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31414850 |
acgcctcactcccttgtaccgcttccatacaggaggcatgcttacttcacgcgcctctacagttgtgtctaaatcattgtcacttttagggcttggaaaa |
31414751 |
T |
|
| Q |
119 |
ggttgatgagatttcagcatgctagaatcatcaaaaagaaggtattgttgaatgtgttccaaatattccaaatctgagtctttggtggttgaagccatgt |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31414750 |
ggttgatgagatttcagcatgctagaatcatcaaaaagaaggtattgttgaatgtgttccaaatattccaaatctgagtctttggtggttgaagccatgt |
31414651 |
T |
|
| Q |
219 |
tttggaggaaagagtagtggtattttggatctaaagtctaccgtttgtggaagcaatgagacttgtggatatggtgctatactaactttatttatatatt |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31414650 |
tttggaggaaagagtagtggtattttggatctaaagtctaccgtttgtggaagcaatgagacttgtggatatggtgctatactaactttatttatatatt |
31414551 |
T |
|
| Q |
319 |
gcaacaattcttgtttatgaaattgtttattcaaaaactaacattgaaaccgcgtgtggtatttcattatttaatctatatattcccttaaggtcatttc |
418 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31414550 |
gcaacaattcttgtttatgaaattgtttattcaaaaactaacattgaaaccgcgtgtggtatttcattatttaatctatatattcccttaaggtcatttc |
31414451 |
T |
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| Q |
419 |
tgtgaaacttcatgaatttttgagttgtgccaatggtcatcactttcagttgttcaataaatgtataacaaaaccctta |
497 |
Q |
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| T |
31414450 |
tgtgaaacttcatgaatttttgagttgtgccaatggtcatcactttcagttgttcaataaatgtataacaaaaccctta |
31414372 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 19 - 486
Target Start/End: Complemental strand, 31410889 - 31410413
Alignment:
| Q |
19 |
acgcctcactcccttgtaccgcttccatacaggaggcgttcttacttcacgcgcctctacagttgtgtctaaatcattgtcacttttagggcttggaaaa |
118 |
Q |
| |
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||||||||| ||||||||||||||||||| ||||| || |||||||||||||||||||| |||||||| | |||||||||||||||||||||||| || |
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| T |
31410889 |
acgcctcacgcccttgtaccgcttccatatgggaggggtgtttacttcacgcgcctctacaattgtgtctgactcattgtcacttttagggcttggagaa |
31410790 |
T |
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| Q |
119 |
ggttgatgagatttcagcatgctagaatcatcaaaaagaaggtattgttgaatgtgttccaaatattccaaatctgagtctttggtggttgaagccatgt |
218 |
Q |
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||||||| |||| | || | ||| ||||||||||||||||||||||||||||| ||||||||||| | ||||||||||| |||||||| |||||||||| |
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| T |
31410789 |
ggttgataagatgttagaaagctggaatcatcaaaaagaaggtattgttgaatatgttccaaataggcaaaatctgagtcattggtggtagaagccatgt |
31410690 |
T |
|
| Q |
219 |
tt----tggaggaaaga----gtagtggtattttggatctaaagtctaccgtttgtggaagcaatgagacttgtggatatggtgctatactaact----t |
306 |
Q |
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|| | || || ||| || ||| || ||| ||||||| | | |||||||||||||| ||||||||| | ||||| |||| |||| ||| | |
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| T |
31410689 |
ttaatttagatgagagaattagtggtgttaatttagatctaagtttt--cgtttgtggaagcactgagacttgggaatatg-tgctctactcactacact |
31410593 |
T |
|
| Q |
307 |
tatttatatattgcaacaattcttgtttatgaaattgtttattcaaaaactaacattgaaaccgcgtgtggtatttcattatttaatctatatattccct |
406 |
Q |
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||| ||||||| ||||||| ||||||||||||||||||||||||||||| ||||||||||| ||||||| ||||||||||||||||||||||||||||| |
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| T |
31410592 |
tatatatatatagcaacaactcttgtttatgaaattgtttattcaaaaatgaacattgaaacagcgtgtgttatttcattatttaatctatatattccct |
31410493 |
T |
|
| Q |
407 |
taaggtcatttctgtgaaacttcatgaatttttgagttgtgccaatggtcatcactttcagttgttcaataaatgtataa |
486 |
Q |
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||||||||||||||||||||||| |||| | | ||||||||||| |||||||||||| ||||||||| ||||| |||| |
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| T |
31410492 |
taaggtcatttctgtgaaacttcctgaactaattagttgtgccaacggtcatcactttttgttgttcaacaaatgaataa |
31410413 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 143 - 207
Target Start/End: Complemental strand, 31407594 - 31407530
Alignment:
| Q |
143 |
gaatcatcaaaaagaaggtattgttgaatgtgttccaaatattccaaatctgagtctttggtggt |
207 |
Q |
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||||||||| |||||||||||||||||| | |||||||||| | || ||||||||||| ||||| |
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| T |
31407594 |
gaatcatcatgaagaaggtattgttgaatatcttccaaatatgcaaactctgagtcttttgtggt |
31407530 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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