View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9704_low_7 (Length: 457)
Name: NF9704_low_7
Description: NF9704
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9704_low_7 |
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Alignment Details
Target: chr7 (Bit Score: 306; Significance: 1e-172; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 53 - 441
Target Start/End: Original strand, 20356635 - 20357021
Alignment:
| Q |
53 |
cctagagtgttaaccacatagtattttcgtgtacacttaaacacacaacaaggtatcaattattatcataaaaatatagactcgcat-cagttgaaatgt |
151 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||| |||||||||||| |
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| T |
20356635 |
cctagagtgttaaccacatagtattttcgtgtacacttaaacacacaacaaggtatcaattattatcataaaaatatatactcacattcagttgaaatgt |
20356734 |
T |
|
| Q |
152 |
acttttcacatcatgtggcaaccgatatgaggtgacattatgtggtat--gtccacgtcattttacatcggg-acgaactgttgttacagtatatcaaac |
248 |
Q |
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| T |
20356735 |
acttttcacatcatgtggcaaccgatgtgaggtgacattatgtggtatatgtccacgtcatttcacatcggggacgaattgttgtga-----tatcaaac |
20356829 |
T |
|
| Q |
249 |
tttccacatcgggcctttcacccactgatgttataccttctctttaaaatttaacatcagggttttcacatcagttgttctttaacccatattaagttac |
348 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20356830 |
tttccacatcgggcctttcacccactgatgttataccttctctttaaaatttaacatcagggttttcacatcagttgttctttaacccatattaagttac |
20356929 |
T |
|
| Q |
349 |
attttatgtaatcccagatgtgtagaacaatgcaagaatttttatggatccaaggtccccccttctgaattctcgacatatcatcttttttgt |
441 |
Q |
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| T |
20356930 |
attttatgtaatcccaaatgtgtagaacaatgcaagaatttttatggatccaaggt-cccccttttgaattctcgacatatcatcttttttgt |
20357021 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 11 - 54
Target Start/End: Original strand, 20356570 - 20356613
Alignment:
| Q |
11 |
cacagatgatgaagcattgtgtttaccaaagtgttttcttcccc |
54 |
Q |
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| T |
20356570 |
cacagatgatgaagcattgtgtttaccaaagtgttttcttcccc |
20356613 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 151 - 324
Target Start/End: Complemental strand, 24478665 - 24478497
Alignment:
| Q |
151 |
tacttttcacatcatgtggcaaccgatatgaggtgacattatgtggtatgtccacgtcattttacatcggg-acgaactgttgttacagtatatcaaact |
249 |
Q |
| |
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|||||||||||||| ||||||| ||| | ||||| ||| |||||| |||| |||||||||| ||||| || |||||||| ||| | || ||| | |
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| T |
24478665 |
tacttttcacatcagatggcaactgatgtaaggtgtcatgatgtggaatgtgcacgtcatttcacatcaggtacgaactgatgtgatag-----caatat |
24478571 |
T |
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| Q |
250 |
ttccacatcgggcctttcacccactgatgttataccttctctttaaaatttaacatcagggttttcacatcagtt |
324 |
Q |
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| T |
24478570 |
ttccacatctggcttttttcc-actgatgtgatacattctttttaaaatttaagatcagggttttcacatcagtt |
24478497 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 137 - 218
Target Start/End: Complemental strand, 27966344 - 27966263
Alignment:
| Q |
137 |
catcagttgaaatgtacttttcacatcatgtggcaaccgatatgaggtgacattatgtggtatgtccacgtcattttacatc |
218 |
Q |
| |
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|||||||||||| |||||||||||||| |||||||||||| | |||||| || |||||| |||| ||| ||||| ||||| |
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| T |
27966344 |
catcagttgaaaactacttttcacatcaggtggcaaccgatgtaaggtgatatgatgtggaatgtgcacaccatttcacatc |
27966263 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 244 - 326
Target Start/End: Complemental strand, 39295752 - 39295671
Alignment:
| Q |
244 |
caaactttccacatcgggcctttcacccactgatgttataccttctctttaaaatttaacatcagggttttcacatcagttgt |
326 |
Q |
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|||| |||||||||| ||||||| ||||||||||| |||| ||||||||||||||||| |||| || ||| ||||||||||| |
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| T |
39295752 |
caaattttccacatccggcctttt-cccactgatgtgatacgttctctttaaaatttaagatcacgggttttacatcagttgt |
39295671 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 137 - 326
Target Start/End: Original strand, 8355869 - 8356053
Alignment:
| Q |
137 |
catcagttgaaatgtacttttcacatcatgtggcaaccgatatgaggtgacattatgtggtatgtccacgtcattttacatcggg-acgaactgttgtta |
235 |
Q |
| |
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||||||||| || ||||||||||||||| || || ||||| | | |||| || |||||||||||| || |||||| ||||| || |||||||| ||| | |
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| T |
8355869 |
catcagttggaaagtacttttcacatcaggtagcgtccgatgtaaagtgatatgatgtggtatgtcaacatcatttcacatcaggtacgaactgatgtga |
8355968 |
T |
|
| Q |
236 |
cagtatatcaaactttccacatcgggcctttcacccactgatgttataccttctctttaaaatttaacatcagggttttcacatcagttgt |
326 |
Q |
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| T |
8355969 |
-----taacaaattttccacatccggcctttt-cccactgatgtgatatgttctctttaaaatttaagatcacgagttttacatcagttgt |
8356053 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 137 - 218
Target Start/End: Original strand, 35671324 - 35671405
Alignment:
| Q |
137 |
catcagttgaaatgtacttttcacatcatgtggcaaccgatatgaggtgacattatgtggtatgtccacgtcattttacatc |
218 |
Q |
| |
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|||||||||||| | ||||||| ||||| |||||||| ||| | ||||| ||| ||||||||||| || || ||||||||| |
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| T |
35671324 |
catcagttgaaaagcacttttcgcatcaggtggcaactgatgtaaggtgtcatgatgtggtatgtttacatctttttacatc |
35671405 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 137 - 218
Target Start/End: Original strand, 38455635 - 38455716
Alignment:
| Q |
137 |
catcagttgaaatgtacttttcacatcatgtggcaaccgatatgaggtgacattatgtggtatgtccacgtcattttacatc |
218 |
Q |
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| T |
38455635 |
catcagttgaaaagcacttttcgcatcaggtggcaactgatgtaaggtgtcatgatgtggtatgttcacatcttttcacatc |
38455716 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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