View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9704_low_8 (Length: 446)
Name: NF9704_low_8
Description: NF9704
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9704_low_8 |
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Alignment Details
Target: chr4 (Bit Score: 208; Significance: 1e-114; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 4 - 223
Target Start/End: Complemental strand, 36763803 - 36763584
Alignment:
| Q |
4 |
tattactaaccactatgaattagcacaaccactactaagcgcgtgttcggaaacttataaagtcacggtgtcaccgtgccattactgaagctgaaatatg |
103 |
Q |
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| T |
36763803 |
tattactaaccactatgaattagcacagccactactaagcacgtgttcggaaacttataaagtcacggtgtcaccgtgccattactgaagctgaaatttg |
36763704 |
T |
|
| Q |
104 |
ttgcttcagtaaagtcacgttcaaagtgcataggaacatgagaaatgtcaacgcggcacacaaccaaatatgatttaattttttgttttatacaatttta |
203 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36763703 |
ttgcttcagtaaagtcacgttcaaagtgcataggaacatgagaaatgtcaacgcggcacacaaccaaatatgatttaattttttgttttatacaatttta |
36763604 |
T |
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| Q |
204 |
gatgatatcaacattttgtt |
223 |
Q |
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|||||||||||||||||||| |
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| T |
36763603 |
gatgatatcaacattttgtt |
36763584 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 154; E-Value: 2e-81
Query Start/End: Original strand, 262 - 423
Target Start/End: Complemental strand, 36763545 - 36763384
Alignment:
| Q |
262 |
ttaccacagcaccagtgtccatgtgactaacatcagctgtgacaccaggggtgttgacgacatcgtaaagatgaagaactgaaaccaatgggttcatctt |
361 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||| |
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| T |
36763545 |
ttaccacagcaccagtgtccatgtgactaacatcagctgtgacaccaggggtgttgacaacatcgtaaagatgaagaactgaaaccagtgggttcatctt |
36763446 |
T |
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| Q |
362 |
caacagcaaagaaagggattgaccaattccaccagcagcccccaatactgctactttgaatc |
423 |
Q |
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| T |
36763445 |
caacagcaaagaaagggattgaccaattccaccagcagcccccaatactgctactttgaatc |
36763384 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 279 - 423
Target Start/End: Original strand, 4991489 - 4991633
Alignment:
| Q |
279 |
tccatgtgactaacatcagctgtgacaccaggggtgttgacgacatcgtaaagatgaagaactgaaaccaatgggttcatcttcaacagcaaagaaaggg |
378 |
Q |
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||||||||||| | ||||| || |||||||| || || || ||||| |||||||||||||| ||||||||||| || ||||||| || || |||||| | |
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| T |
4991489 |
tccatgtgactgatatcagaagtaacaccaggagtattaacaacatcataaagatgaagaacagaaaccaatggattgatcttcatcaacatagaaagag |
4991588 |
T |
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| Q |
379 |
attgaccaattccaccagcagcccccaatactgctactttgaatc |
423 |
Q |
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||| || ||||| || ||||| ||||| | || |||||||||| |
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| T |
4991589 |
gttgtcctattccccctgcagcacccaaaatcgcaactttgaatc |
4991633 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 102 - 139
Target Start/End: Original strand, 35038203 - 35038240
Alignment:
| Q |
102 |
tgttgcttcagtaaagtcacgttcaaagtgcataggaa |
139 |
Q |
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| T |
35038203 |
tgttgcttcagttaagtcacgttcaaagtgcataggaa |
35038240 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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