View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9704_low_9 (Length: 393)
Name: NF9704_low_9
Description: NF9704
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9704_low_9 |
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Alignment Details
Target: chr3 (Bit Score: 330; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 18 - 383
Target Start/End: Complemental strand, 11650594 - 11650229
Alignment:
| Q |
18 |
agttaagagattaattgttattaataaatataagaattgttgtttagtaatttttgttattgattttgaagaatatgtgaattttgaataattataagta |
117 |
Q |
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| T |
11650594 |
agttaagacattaattgttattaataaatataagaattgttgtttagtaatttttgttattgattttgaaaaatatgtgaattttgaataattataagta |
11650495 |
T |
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| Q |
118 |
tgattgattagttgtgaaattggttttgttgaaaagatgatataaataggaatggtgaatgttcatcagagacatacagaaaattaatgagtagaaaaac |
217 |
Q |
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| T |
11650494 |
tgattgattagttgtgaaattggttttgttgaaaagatgatataaataggaatggtgaatgttcatcagagacttacagaaaattaatgagtagaaaaac |
11650395 |
T |
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| Q |
218 |
cactatatctgcaaacctcagaatttgttgtgcaataattgagtgggttagttatatgctcatgaaaatgaaaatatgtgagttatgattttctgtaaga |
317 |
Q |
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| T |
11650394 |
cgctttatctgcaaacctgagaatttgttgtgcaataattgagtgggttagttatatgatcatgaaaatgaaaatatgtgagttatgattttctgtaaga |
11650295 |
T |
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| Q |
318 |
tcttgtaattgtattgtatgcacggtaattgttttgtatgcactgtaccgtgagttcatgcctttg |
383 |
Q |
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| T |
11650294 |
ccttgtaattgtattgtatgcacggtaattgttttgtatgcactgtaccgtgagttcattcctttg |
11650229 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 101; Significance: 6e-50; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 101; E-Value: 6e-50
Query Start/End: Original strand, 25 - 141
Target Start/End: Complemental strand, 46002733 - 46002618
Alignment:
| Q |
25 |
agattaattgttattaataaatataagaattgttgtttagtaatttttgttattgattttgaagaatatgtgaattttgaataattataagtatgattga |
124 |
Q |
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| T |
46002733 |
agattaattgttattaataaatataagaattgttggttagtaatttttgttattgattttgaagaatatgtgaattttg-ataattatatgtatgattga |
46002635 |
T |
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| Q |
125 |
ttagttgtgaaattggt |
141 |
Q |
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| T |
46002634 |
ttagttgtgaaattggt |
46002618 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 22 - 141
Target Start/End: Original strand, 31211181 - 31211299
Alignment:
| Q |
22 |
aagagattaattgttattaataaatataagaattgttgtttagtaatttttgttattgattttgaagaatatgtgaattttgaataattataagtatgat |
121 |
Q |
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| T |
31211181 |
aagagattaattcttattaataaatataagaattgttgtttagtaaattttgttattgattttaaagaatatgtgaattttg-ataattatacttatgat |
31211279 |
T |
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| Q |
122 |
tgattagttgtgaaattggt |
141 |
Q |
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| T |
31211280 |
tgatttgttgtgaaattggt |
31211299 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 25 - 66
Target Start/End: Complemental strand, 46002805 - 46002764
Alignment:
| Q |
25 |
agattaattgttattaataaatataagaattgttgtttagta |
66 |
Q |
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| T |
46002805 |
agattaattgttattaataaatataagaattgttggttagta |
46002764 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 84; Significance: 8e-40; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 22 - 141
Target Start/End: Original strand, 24423313 - 24423430
Alignment:
| Q |
22 |
aagagattaattgttattaataaatataagaattgttgtttagtaatttttgttattgattttgaagaatatgtgaattttgaataattataagtatgat |
121 |
Q |
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| T |
24423313 |
aagagattaatggttattaataaatataataattgttgtttagtaaattttgttattga-attgaagaatatgtgaattttg-ataattataagtatgat |
24423410 |
T |
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| Q |
122 |
tgattagttgtgaaattggt |
141 |
Q |
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| T |
24423411 |
tgattagttgcgaaattggt |
24423430 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 22 - 71
Target Start/End: Complemental strand, 29115605 - 29115556
Alignment:
| Q |
22 |
aagagattaattgttattaataaatataagaattgttgtttagtaatttt |
71 |
Q |
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|||| ||||||| |||||||||||||||| |||||||||||||||||||| |
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| T |
29115605 |
aagatattaattattattaataaatataacaattgttgtttagtaatttt |
29115556 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 62; Significance: 1e-26; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 141 - 286
Target Start/End: Original strand, 21857225 - 21857370
Alignment:
| Q |
141 |
ttttgttgaaaagatgatataaataggaatggtgaatgttcatcagagacatacagaaaattaatgagtagaaaaaccactatatctgcaaacctcagaa |
240 |
Q |
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|||||||| ||| |||||| ||||||| ||||||||||||||||| | |||||||||||||| ||||| |||| ||||||||| ||||| | |||| |
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| T |
21857225 |
ttttgttggaaatatgatactaataggactggtgaatgttcatcaggaagttacagaaaattaataagtaggaaaattactatatctacaaacttgagaa |
21857324 |
T |
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| Q |
241 |
tttgttgtgcaataattgagtgggttagttatatgctcatgaaaat |
286 |
Q |
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| T |
21857325 |
ttagttgtgcattaattgaatgtgttagttatatgatcatgaaaat |
21857370 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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