View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9705_high_1 (Length: 621)
Name: NF9705_high_1
Description: NF9705
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9705_high_1 |
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Alignment Details
Target: chr4 (Bit Score: 553; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 553; E-Value: 0
Query Start/End: Original strand, 1 - 603
Target Start/End: Original strand, 53037461 - 53038055
Alignment:
| Q |
1 |
tggaggaatcgtgtggagcctaatttaccaaaagggtattttgggaatgggactttggatgttgtggctactagtcttgcaggggatttaatatctaagc |
100 |
Q |
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| T |
53037461 |
tggaggaatcgtgtggagcctaatttaccaaaagggtattttgggaatgggactttggatgttgtggctactagtcttgcaggggatttaatatctaagc |
53037560 |
T |
|
| Q |
101 |
ctttagggtatgcttcaagtaggataagggaagcgattgagaaagtgaatgatgagtatgtgagaatgggaattgagtattttaagaagcaagaggattt |
200 |
Q |
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| T |
53037561 |
ctttagggtatgcttcaagtaggataagggaagcgattgagaaagtgaatgatgagtatgtgagaatgggaatcgagtattttaagaagcaagaggattt |
53037660 |
T |
|
| Q |
201 |
gactaagtttcaagatcttcatgctaagatggggagtgatgataaagggccattttatggaaatccaaatttaggagtggttagttggttgacattgcca |
300 |
Q |
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| T |
53037661 |
gactaagtttcaagatcttcatgctaagatggggagtgatgataaagggccattttatgggaatccaaatttaggagtggttagttggttgacattgcca |
53037760 |
T |
|
| Q |
301 |
atttatggacttgattttggatgggggaaagaagtttatatggggccaggaacacatgattcagatggagattctttgcttcttcctagttatgatgatg |
400 |
Q |
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| T |
53037761 |
atttatggacttgattttggatgggggaaagaagtttatatggggccaggaacacatgattcagatggagattctttgcttcttcctagttatgatgatg |
53037860 |
T |
|
| Q |
401 |
atggatctttgttggttgctatttgtttgcaagaggttcatatggatgcattcaagaggcatttttatcaagacattgtgtgatccatgcatggatgtat |
500 |
Q |
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| T |
53037861 |
atggatctttgttggttgctatttgtttgcaagaggttcatatggatgcattcaagaggcatttttatcaagacattgtgtgatc----catggatgtat |
53037956 |
T |
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| Q |
501 |
tgacatgcagaaactaaaaataattaagttggataattctagactttacaaataacctaaacaaaataagtataaaatttaattgaattatatgtagcaa |
600 |
Q |
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| T |
53037957 |
tgacatgcagaaactaaaaa----taagttgggtaattctagactttataaataacctaaacaaaataagtataaaatttaattgaattatatgtagcaa |
53038052 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 9 - 496
Target Start/End: Complemental strand, 39996123 - 39995636
Alignment:
| Q |
9 |
tcgtgtggagcctaatttaccaaaagggtattttgggaatgggactttggatgttgtggctactagtcttgcaggggatttaatatctaagcctttaggg |
108 |
Q |
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| T |
39996123 |
tcgtgtggaacctaatttacctaaagggtattttgggaatgccattttagatgttttggctactagtctagcaggtgatttaatgtctaaacccttaggg |
39996024 |
T |
|
| Q |
109 |
tatgcttcaagtaggataagggaagcgattgagaaagtgaatgatgagtatgtgagaatgggaattgagtattttaagaagcaagaggatttgactaagt |
208 |
Q |
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| T |
39996023 |
tatgcttcaagtaggataagggaagcggttgagaaagtgaacgatgagtatattaggttggggaatgagtactttaagaagcaagaagatttgactaagt |
39995924 |
T |
|
| Q |
209 |
ttcaagatcttcatgctaagatggggagtgatgataaagggccattttatggaaatccaaatttaggagtggttagttggttgacattgccaatttatgg |
308 |
Q |
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| T |
39995923 |
tccaagatcttcaagtt---gtagggaatggtgagaaggggcctttttattggaatcctaatttaggagtgactagttggttgtcattgccaatttatgg |
39995827 |
T |
|
| Q |
309 |
acttgattttggatgggggaaagaagtttatatggggccaggaacacatgattca---gatggagattctttgcttcttcctagttatgatgatgatgga |
405 |
Q |
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|||||||||||| ||||| || || ||||||||||||| |||||||||||| | ||||||||||| ||||||||||||||| |||||||||| |
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| T |
39995826 |
acttgattttgggtggggaaaggaggtttatatggggctaggaacacatgaagaacttgatggagattcattgcttcttcctagtcccaatgatgatggt |
39995727 |
T |
|
| Q |
406 |
tctttgttggttgctatttgtttgcaagaggttcatatggatgcattcaagaggcatttttatcaagacattgtgtgatccatgcatggat |
496 |
Q |
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|||||||||||| ||||||| | |||||| | |||||||||| || |||| ||||||||||||||||||||||||||||||| |||||| |
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| T |
39995726 |
tctttgttggttattatttgtctacaagagatccatatggatgtctttaagaagcatttttatcaagacattgtgtgatccatggatggat |
39995636 |
T |
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