View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9705_high_13 (Length: 248)
Name: NF9705_high_13
Description: NF9705
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9705_high_13 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 221; Significance: 1e-122; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 1 - 241
Target Start/End: Original strand, 9291356 - 9291596
Alignment:
| Q |
1 |
ccaatatcaagtatcccagctctataagagtaatcctctttactaaatacaccactctctctttagaaccacccctccttactaaatacatcccactctt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9291356 |
ccaatatcaagtatcccagctctataagagtattcctctttactaaatacaccactctctctttagaaccacccctccttactaaatacatcccactctt |
9291455 |
T |
|
| Q |
101 |
ttttaccaagaccatgaattaggtgtaacgtgttgatgaaaaatctgatttcaaggtggtccaagaagcacccactagttgtacactctactttattaag |
200 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||| |
|
|
| T |
9291456 |
ttttaccaagaccatgaattaggtggaacgtgttgatgaaaaatctgatttcaaggtggtccaagaagcaaacactagttgtacactctactctattaag |
9291555 |
T |
|
| Q |
201 |
ttaatgaaaatacaacttcagattataaattttctctctgc |
241 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9291556 |
ttaatgaaaatacaacttcagattataaattttctctctgc |
9291596 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University