View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9705_high_17 (Length: 204)
Name: NF9705_high_17
Description: NF9705
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9705_high_17 |
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Alignment Details
Target: chr3 (Bit Score: 47; Significance: 5e-18; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 1 - 81
Target Start/End: Original strand, 40471243 - 40471315
Alignment:
| Q |
1 |
taacaatttaactgagtttaattaattaattaattctaaaatattaaggggggcgggccagtttataaacttacacattcc |
81 |
Q |
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| T |
40471243 |
taacaatttaactgagtttaa----ttaattaattctaaaatattaaggg----gggccagtttataaacttacacattcc |
40471315 |
T |
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Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 133 - 192
Target Start/End: Original strand, 40471363 - 40471417
Alignment:
| Q |
133 |
ccccacaccactctcatctcctctccaatccaagctagccatagaaactacacagtccta |
192 |
Q |
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| T |
40471363 |
ccccacaccactctcatctcctctcca-----agctagccatagaaactacacagtccta |
40471417 |
T |
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