View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9705_high_2 (Length: 519)
Name: NF9705_high_2
Description: NF9705
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9705_high_2 |
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Alignment Details
Target: chr3 (Bit Score: 226; Significance: 1e-124; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 19 - 248
Target Start/End: Original strand, 48713675 - 48713904
Alignment:
| Q |
19 |
gattaatccaagatcatttttagaagtagaatatatgctattattgcttcttattaggccttctgtatccaaatttctagacaaccctttatctggtgtc |
118 |
Q |
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| T |
48713675 |
gattaatccaagatcatttttagaagtagaatatatgctattattgcttcttattaggccttctgtatccaaatttctagacaaccctttatctggtgtc |
48713774 |
T |
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| Q |
119 |
caaaatccaactctcttttcaccatcaccaatcacattaattatttcatatattgatgcttgtaacttcccaccaacaagattgaaatcaccactaagac |
218 |
Q |
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| T |
48713775 |
caaaatccaactctcttttcaccatcaccaatcacattaattatttcatatattgatgcttgtaacttcccaccaacaacattgaaatcaccactaagac |
48713874 |
T |
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| Q |
219 |
cattaaatctagtgtttgacaaagcttcac |
248 |
Q |
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| T |
48713875 |
cattaaatctagtgtttgacaaagcttcac |
48713904 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 175; E-Value: 5e-94
Query Start/End: Original strand, 70 - 248
Target Start/End: Original strand, 48701620 - 48701798
Alignment:
| Q |
70 |
tattaggccttctgtatccaaatttctagacaaccctttatctggtgtccaaaatccaactctcttttcaccatcaccaatcacattaattatttcatat |
169 |
Q |
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| T |
48701620 |
tattaggccttctgtatccaaatttctagacaaccctttatctggtgtccaaaatccaactctcttttcaccatcaccaatcacattaattatttcatat |
48701719 |
T |
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| Q |
170 |
attgatgcttgtaacttcccaccaacaagattgaaatcaccactaagaccattaaatctagtgtttgacaaagcttcac |
248 |
Q |
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| T |
48701720 |
attgatgcttgtaacttcccaccaagaagattgaaatcaccactaagaccattaaatctagtgtttgacaaagcttcac |
48701798 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 168; E-Value: 8e-90
Query Start/End: Original strand, 297 - 505
Target Start/End: Original strand, 48713983 - 48714191
Alignment:
| Q |
297 |
tgtaaccaaatttggtggttccaattccaaccttctcaatagccattgctaatgcaattgtagcatcataagcccatattccaaaaatgttcaaatttgt |
396 |
Q |
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| T |
48713983 |
tgtaatcaaatttggtgtttccaattccaactttctcaatagccattgctaatgcaattgtagcatcataagcccatattccaaaaatgttcaaatttgt |
48714082 |
T |
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| Q |
397 |
gtcaacaagttttggattgtcacttatgaatttccttttccatctaactctaaaatcatctagnnnnnnngttctaggaatataagtcctaacacccaac |
496 |
Q |
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| T |
48714083 |
gtcaacaagttttggattgtcacttatgaatttccttttccatctaaccctaaaatcatctagtttttttgttctaggaatataagtcctaagacccaac |
48714182 |
T |
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| Q |
497 |
actccttcc |
505 |
Q |
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||||||||| |
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| T |
48714183 |
actccttcc |
48714191 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 164; E-Value: 2e-87
Query Start/End: Original strand, 297 - 505
Target Start/End: Original strand, 48701877 - 48702085
Alignment:
| Q |
297 |
tgtaaccaaatttggtggttccaattccaaccttctcaatagccattgctaatgcaattgtagcatcataagcccatattccaaaaatgttcaaatttgt |
396 |
Q |
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| T |
48701877 |
tgtaatcaaatttggtgtttccaattccaactttctcaatagccattgctaatgcaattgtagcatcataagcccatattccaaaaatgttcaaatttgt |
48701976 |
T |
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| Q |
397 |
gtcaacaagttttggattgtcacttatgaatttccttttccatctaactctaaaatcatctagnnnnnnngttctaggaatataagtcctaacacccaac |
496 |
Q |
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| T |
48701977 |
gtcaacaagttttggattgtcatttatgaatttacttttccatctaactctaaaatcatctagtttttttgttctaggaatataagtcctaagacccaac |
48702076 |
T |
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| Q |
497 |
actccttcc |
505 |
Q |
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||||||||| |
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| T |
48702077 |
actccttcc |
48702085 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 254 - 297
Target Start/End: Original strand, 48701720 - 48701763
Alignment:
| Q |
254 |
attgatgcttgtaacttcccaacaacaagattgaaatcaccact |
297 |
Q |
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||||||||||||||||||||| ||| |||||||||||||||||| |
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| T |
48701720 |
attgatgcttgtaacttcccaccaagaagattgaaatcaccact |
48701763 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 254 - 297
Target Start/End: Original strand, 48713826 - 48713869
Alignment:
| Q |
254 |
attgatgcttgtaacttcccaacaacaagattgaaatcaccact |
297 |
Q |
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| T |
48713826 |
attgatgcttgtaacttcccaccaacaacattgaaatcaccact |
48713869 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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