View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9705_high_5 (Length: 364)
Name: NF9705_high_5
Description: NF9705
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9705_high_5 |
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Alignment Details
Target: chr1 (Bit Score: 219; Significance: 1e-120; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 19 - 304
Target Start/End: Original strand, 30709253 - 30709544
Alignment:
| Q |
19 |
actgggcatatattaggttgctccacttgc--tgtgtttcaggaacagtctccctcagagaagaagcgtcaatagacacactagaagatgtcacaacacc |
116 |
Q |
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| T |
30709253 |
actgggcatatattaggttgctccacttgccctgtgtttcaagaacagtctccctcggagaagaagtggcagtagacacactagaagatgtcacaacacc |
30709352 |
T |
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| Q |
117 |
taatgtattcaacagctgaaccagctctaaaataggagtattttcctc--tctgttgaatcgttcccaaagtatcaatcggat--tgctccacaatatct |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
30709353 |
taatgtattcaacagctgaaccagctctaaaataggagtattttcctctatgtgttgaatcgttcccaaagtatcaatcggattgtgctccacaatatct |
30709452 |
T |
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| Q |
213 |
ataacattctccaatggaaaatggaaggaggtgctggactgttctccgttgtggcgttgatgcaccttcaatcacatttgccacctcagtca |
304 |
Q |
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| T |
30709453 |
ataacattctccaatggaaaatggaaggaggttccggactgttctcggttgtggcgttgctgcaccttcaatcacatttgccacctcagtca |
30709544 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 308 - 354
Target Start/End: Original strand, 30709565 - 30709612
Alignment:
| Q |
308 |
ggacatttacaagtatc-gttcaggttcattgtgttgaggttcctttg |
354 |
Q |
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| T |
30709565 |
ggacattttcaagtatcggttcaggttcattgtgttgaggttcctttg |
30709612 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 84; Significance: 8e-40; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 27 - 304
Target Start/End: Complemental strand, 13231764 - 13231488
Alignment:
| Q |
27 |
tatattaggttgctccacttgctgtgtttcaggaacagtctccctcagagaagaagcgtcaatagacacactagaagatgtcacaacacctaatgtattc |
126 |
Q |
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| T |
13231764 |
tatactaggttgctacaccttttgtgtttcaagaaccatctccctcctagaagaagtggcagtagacacaccaatagatgtcgcaacagctgatgtcttc |
13231665 |
T |
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| Q |
127 |
aacagctgaaccagctctaaaataggagtattttcctctctgttgaatcgttcccaaagtatcaatcggattgc--tccacaatatctataacattctcc |
224 |
Q |
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| T |
13231664 |
aacggcttaatcggctctaaaatatgagtattatgc-----gttgaaccattcccaaagtatcaatctgattgcgctccacaatatctattacattctcc |
13231570 |
T |
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| Q |
225 |
aatggaaaatggaaggaggtgctggactgt--tctccgttgtggcgttgatgcaccttcaatcacatttgccacctcagtca |
304 |
Q |
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| T |
13231569 |
aatcgaaaatggaaggaggtgccaaactgtcctctcggttgcagcgtttatgcaccttcaatcacatttgccacctcagtca |
13231488 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 255 - 346
Target Start/End: Original strand, 23850844 - 23850934
Alignment:
| Q |
255 |
tctccgttgtggcgttgatgcaccttcaatcacatttgccacctcagtcacctggacatttacaagtatc-gttcaggttcattgtgttgagg |
346 |
Q |
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| T |
23850844 |
tctctgttgcggcattaatgcaccttcaatcgcattttccgcctc-gtcacctggacattttcaa-tatcggctcacgttcattgtgttgagg |
23850934 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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