View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9705_low_1 (Length: 725)

Name: NF9705_low_1
Description: NF9705
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9705_low_1
NF9705_low_1
[»] chr5 (1 HSPs)
chr5 (9-703)||(3570237-3570914)


Alignment Details
Target: chr5 (Bit Score: 556; Significance: 0; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 556; E-Value: 0
Query Start/End: Original strand, 9 - 703
Target Start/End: Original strand, 3570237 - 3570914
Alignment:
Q  9 gaagcataggcatccatttgaatggttcacattctctagctgtggtaacagccagaattacaatgagtcagcataaagttctaactaaaaacagaaagca 108  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||                     ||||||||||||||||||||    
T  3570237 gaagcataggcatccatttgaatggttcacattctctagctgtggtaacagccagaatt---------------------ctaactaaaaacagaaagca 3570315  T
Q  109 tgctataaatggtataacagttgggggtccataaataaaaccggtctgcactaaaattttcagactaaatataatgatctttattttgaacatcaatgga 208  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3570316 tgctataaatggtataacagttgggggtccataaataaaaccggtctgcactaaaattttcagactaaatataatgatctttattttgaacatcaatgga 3570415  T
Q  209 aaatttaattatacgtaaactattcagttttatgtctctgttggagt---ctaggcttgagcccctttttgttaagnnnnnnngacattgtataaggaga 305  Q
    |||||||||||||||||||||||||||||||||||||||||||||||   ||||||||||||||||||||||||||       |||||||||||||||||    
T  3570416 aaatttaattatacgtaaactattcagttttatgtctctgttggagtactctaggcttgagcccctttttgttaagaaaaaaagacattgtataaggaga 3570515  T
Q  306 agtatctcatccgcattccttagcatatggtcggttggtgggccaggctcgtgggtttatattagattaccattataataatgggtttgagttttgacat 405  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3570516 agtatctcatccgcattccttagcatatggtcggttggtgggccaggctcgtgggtttatattagattaccattataataatgggtttgagttttgacat 3570615  T
Q  406 tgattcatttcaatactgtacaaatatatactgtagtagtaattgtttagtgtcgtaatattattttggaccaaccaa-ccagagacagcgtgaggttac 504  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  3570616 tgatacatttcaatactgtacaaatatatactgtagtagtaattgtttagtgtcgtaatattattttggaccaaccaaaccagagacagcgtgaggttac 3570715  T
Q  505 tccaacagaataacaattattatttctctagaaacctttaaatctattgtcttgtctggtaataatatatttgtactttttgaagggcacctgcaactgc 604  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| || |||||||||||||    
T  3570716 tccaacagaataacaattattatttctctagaaacctttaattctattgtcttgtctggtaataatatatttgtactttttgagggtcacctgcaactgc 3570815  T
Q  605 aataatgttgtggagtggaatggtgtggtgcattcttcagattgtttggccgcacggtaattcagtgagccgtttccctctaggctcaatagtgtcgaa 703  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||| ||||||    
T  3570816 aataatgttgtggagtggagtggtgtggtgcattcttcagattgtttggccgctcggtaattcagtgagccgtttccctctgggctcaatagcgtcgaa 3570914  T

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