View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9705_low_11 (Length: 351)
Name: NF9705_low_11
Description: NF9705
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9705_low_11 |
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Alignment Details
Target: chr1 (Bit Score: 300; Significance: 1e-169; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 300; E-Value: 1e-169
Query Start/End: Original strand, 1 - 334
Target Start/End: Complemental strand, 6157656 - 6157326
Alignment:
| Q |
1 |
tggttattggatcatatttgcagagggaaaggggaagagtgtgagaagctatcaaagcaataaggtagcaactaggtttagttttcaagagctttcaaag |
100 |
Q |
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| T |
6157656 |
tggttattggatcatatttgcagagggaaaggggaagagtgtgagaagctatcaaagcaataaggtagcaactaggtttagttttcaagagctttcaaag |
6157557 |
T |
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| Q |
101 |
gtgacaggaggttttaatgaattgattggcgaaggtggttttggaagagtttacaagggtcgtctccaaaccggcgaggtaacttttaggactttgttcg |
200 |
Q |
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| T |
6157556 |
gtgacaggaggttttaatgaattgattggcgaaggtggttttggaagagtttacaagggtcgtctccaatctggcgaggtaacttttaggactttgttcg |
6157457 |
T |
|
| Q |
201 |
ttacaatattattatgaataaatgaattctttttcggctaaattatacttttggtcattatttaagttacaaacgtcacacactttgctatattttgttg |
300 |
Q |
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| T |
6157456 |
ttacaatattattatgaataaatgaattttttttcggctaaattatacttttggtc---atttaaattacaaacgtcacacactttgctatattttgttg |
6157360 |
T |
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| Q |
301 |
catttgcagcttgttgcagtgaaacagttaaatc |
334 |
Q |
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| T |
6157359 |
catttgcagcttgttgcagtgaaacggttaaatc |
6157326 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 69 - 255
Target Start/End: Original strand, 17966165 - 17966349
Alignment:
| Q |
69 |
caactaggtttagttttcaagagctttcaaaggtgacaggaggttttaatgaattgattggcgaaggtggttttggaagagtttacaagggtcgtctcca |
168 |
Q |
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| T |
17966165 |
caactagttttagttttggatagctttcaatggtgacagaaaattttaaggaattgataggggaaggtggttttggaagagtttacaagggttgtctccc |
17966264 |
T |
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| Q |
169 |
aaccggcgaggtaacttttaggactttgttcgttacaatattattatgaataaatgaattctttttcggctaaattatacttttggt |
255 |
Q |
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| T |
17966265 |
aaccggtgtggtaacttttaggacgttgttcatttatatattataat-tgtaaatgaatt-ttttttggctaaattatacttttggt |
17966349 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 112 - 193
Target Start/End: Complemental strand, 56021267 - 56021186
Alignment:
| Q |
112 |
ttttaatgaattgattggcgaaggtggttttggaagagtttacaagggtcgtctccaaaccggcgaggtaacttttaggact |
193 |
Q |
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| T |
56021267 |
ttttaaggaattgctgggggtaggtggttttggaagtgtttacaagggtcgtctcccaaacggcgaggtaacttttaagact |
56021186 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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