View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9705_low_16 (Length: 292)
Name: NF9705_low_16
Description: NF9705
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9705_low_16 |
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Alignment Details
Target: chr7 (Bit Score: 268; Significance: 1e-150; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 268; E-Value: 1e-150
Query Start/End: Original strand, 1 - 272
Target Start/End: Complemental strand, 38884165 - 38883894
Alignment:
| Q |
1 |
tgacagactttggagtgtgtccgaaagaaagaccagaaccaattgaacagatgaccatcatcatgagggtcataccatagacttttttcctgcccatctt |
100 |
Q |
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| T |
38884165 |
tgacagactttggagtgtgtccgaaagaaagaccagaaccaattgaacagataaccatcatcatgagggtcataccatagacttttttcctgcccatctt |
38884066 |
T |
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| Q |
101 |
atcaccaagccagccaaagaaaagttgccctgaaagtgttccacagaaagctacaccattcacagcagctgatacattgggaggcaatgtaccgggcttc |
200 |
Q |
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| T |
38884065 |
atcaccaagccagccaaagaaaagttgccctgaaagtgttccacagaaagctacaccattcacagcagctgatacattgggaggcaatgtaccgggcttc |
38883966 |
T |
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| Q |
201 |
gcagcaccatcaacgtggtagtatatgcgaccgagcaactttgtaacaagggatacacagaacagatcatag |
272 |
Q |
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| T |
38883965 |
gcagcaccatcaacgtggtagtatatgcgaccgagcaactttgtaacaagggatacacagaacagatcatag |
38883894 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 9 - 272
Target Start/End: Complemental strand, 38893349 - 38893086
Alignment:
| Q |
9 |
tttggagtgtgtccgaaagaaagaccagaaccaattgaacagatgaccatcatcatgagggtcataccatagacttttttcctgcccatcttatcaccaa |
108 |
Q |
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| T |
38893349 |
tttggattgtgtccaaaagaaaggccggaaccaatggagcagattaccattatcatcagtgtcataccatacactttcttcctacccaacttatcaccaa |
38893250 |
T |
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| Q |
109 |
gccagccaaagaaaagttgccctgaaagtgttccacagaaagctacaccattcacagcagctgatacattgggaggcaatgtaccgggcttcgcagcacc |
208 |
Q |
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| T |
38893249 |
gccagccaaagaaaagctgccctgtaagtgtaccacagaaagcaaccccattaaccgcagctgatacattgggtggcaatgtaccgggcttcccggcacc |
38893150 |
T |
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| Q |
209 |
atcaacgtggtagtatatgcgaccgagcaactttgtaacaagggatacacagaacagatcatag |
272 |
Q |
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| T |
38893149 |
atcaacatggtaatatatgcgtcccagcaacttggtaacaagggatatgcagaacagatcatag |
38893086 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 74 - 187
Target Start/End: Original strand, 37315993 - 37316106
Alignment:
| Q |
74 |
accatagacttttttcctgcccatcttatcaccaagccagccaaagaaaagttgccctgaaagtgttccacagaaagctacaccattcacagcagctgat |
173 |
Q |
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| T |
37315993 |
accataaactttttttcttcccattttgtccccaagccaaccaaagaaaagttggcctgctagagtgccacagagagcaacaccatttactgctgctgat |
37316092 |
T |
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| Q |
174 |
acattgggaggcaa |
187 |
Q |
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| T |
37316093 |
acatttggaggcaa |
37316106 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 24 - 160
Target Start/End: Complemental strand, 33115269 - 33115133
Alignment:
| Q |
24 |
aaagaaagaccagaaccaattgaacagatgaccatcatcatgagggtcataccatagacttttttcctgcccatcttatcaccaagccagccaaagaaaa |
123 |
Q |
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||||| ||||||||| ||| |||| |||||||| | ||| |||||||| ||||| ||| ||| || ||||| || ||||||||||| |||||||||| |
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| T |
33115269 |
aaagagagaccagaagcaagtgaagctatgaccataagcataagggtcattccataaactcgttttcttcccattttgtcaccaagccaaccaaagaaaa |
33115170 |
T |
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| Q |
124 |
gttgccctgaaagtgttccacagaaagctacaccatt |
160 |
Q |
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|||| |||| |||| ||||| |||||| |||||||| |
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| T |
33115169 |
gttgtcctgccagtgctccactgaaagcaacaccatt |
33115133 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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